Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H05
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.8  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 625 FFTTFNWLRKLNSAAFXWSLANL--FSYLETFFSVGLTNLPLRSLTWEFRSE 476
           + T  +W   ++   F + +A L  F+ +  F  VG   +PL    WE  +E
Sbjct: 303 YATALDWFLLMS---FGYCIATLLEFAGVHYFTKVGSGEIPLEEEEWENENE 351


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  TISXGHLLILAVGHPKPTQQQWRMMKRIRPNRPKSTASA 159
           T+S     I A+ HP+  Q+  +  K +  + P++T+ A
Sbjct: 327 TVSCIDPWIYAINHPRYRQELQKRCKWMGIHEPETTSDA 365


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  TISXGHLLILAVGHPKPTQQQWRMMKRIRPNRPKSTASA 159
           T+S     I A+ HP+  Q+  +  K +  + P++T+ A
Sbjct: 327 TVSCIDPWIYAINHPRYRQELQKRCKWMGIHEPETTSDA 365


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 70  EXEDGPTRWLSQHEPQLL 17
           E +DGP +W+S  + +++
Sbjct: 73  EEDDGPYKWISPGDTKVM 90


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 399 YWHRIYNLEGD 431
           +WH +Y  EGD
Sbjct: 211 HWHLVYPFEGD 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,156
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)