Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H05
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59390.1 68418.m07442 XH/XS domain-containing protein contain...    29   3.5  
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p...    27   8.1  

>At5g59390.1 68418.m07442 XH/XS domain-containing protein contains
           Pfam domain PF03469: XH domain and PF03468: XS domain
          Length = 561

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 339 GKPKNIDDANEAELQTICQMYWHRIYN-LEGDKYELE 446
           G PK + D N+ +L+T+   Y   +YN +   K E+E
Sbjct: 475 GTPKRVVDENDEKLRTLKNQYGEEVYNEVVRTKLEIE 511


>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
           putative similar to SP|P53042 Serine/threonine protein
           phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
           T) (PPT) {Rattus norvegicus}; contains Pfam profiles
           PF00149: Ser/Thr protein phosphatase, PF00515: TPR
           Domain
          Length = 484

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 70  LAVGHPKPTQQQWRMMKRIRPNRPKSTASALRCASA 177
           LA+G  K   + ++ +KR+ PN P +T     C  A
Sbjct: 92  LAMGKFKDALKDFQQVKRLSPNDPDATRKLKECEKA 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,983,772
Number of Sequences: 28952
Number of extensions: 153164
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)