Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H04
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)             30   2.3  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   5.4  
SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_47437| Best HMM Match : GlcNAc_2-epim (HMM E-Value=2.1)
          Length = 786

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 413 QRLGRCCRQFLYYEDRDYHHNKANFYSSSICKGMPS 306
           ++    CR  L Y  RD  H    FYS+     +PS
Sbjct: 311 EKFAETCRDILLYVMRDLSHKLGGFYSAEDADSLPS 346


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 160 AYSCSWRYILLLLPDNKKSQRSWQWSNKPLYQEGH**SCG 279
           A SC +RY   ++  +     SW W  +  Y  GH   CG
Sbjct: 341 ALSCGYRYGTRIISGSDAQPNSWPWMVQINYNNGH--HCG 378


>SB_52651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 311 ASLCRCWRSKNWPYCDGSH 367
           A LC C ++   PYCDG+H
Sbjct: 26  AFLCGCKQTGTPPYCDGTH 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,500,333
Number of Sequences: 59808
Number of extensions: 418177
Number of successful extensions: 964
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)