Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H04
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-18|CAO82066.1| 134|Caenorhabditis elegans Hypothetical p... 101 4e-22
Z66521-17|CAI46628.1| 103|Caenorhabditis elegans Hypothetical p... 101 4e-22
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 101 4e-22
Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical pr... 34 0.095
Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical pr... 31 0.88
U80839-8|AAB37914.1| 238|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 31 1.2
Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical pr... 28 8.2
>Z66521-18|CAO82066.1| 134|Caenorhabditis elegans Hypothetical
protein W02B12.15b protein.
Length = 134
Score = 101 bits (243), Expect = 4e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +2
Query: 230 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 409
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 68 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127
Query: 410 VVR 418
+V+
Sbjct: 128 IVK 130
>Z66521-17|CAI46628.1| 103|Caenorhabditis elegans Hypothetical
protein W02B12.15a protein.
Length = 103
Score = 101 bits (243), Expect = 4e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +2
Query: 230 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 409
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 37 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 96
Query: 410 VVR 418
+V+
Sbjct: 97 IVK 99
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 101 bits (243), Expect = 4e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +2
Query: 230 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 409
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 68 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127
Query: 410 VVR 418
+V+
Sbjct: 128 IVK 130
>Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical
protein M88.7 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.095
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 269 KVVDFIDIEDITEKASLCRCWRSKNWPYCDGSH 367
K V FI +D+T LC C ++ N P+CDGSH
Sbjct: 116 KPVRFIPDKDMT--VWLCNCKQTNNRPFCDGSH 146
>Z70781-3|CAA94833.2| 352|Caenorhabditis elegans Hypothetical
protein F57A8.5 protein.
Length = 352
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 66 SPFPTXCRACRFQLLLADGFVLEL 137
SP+P C++CRFQ L G LE+
Sbjct: 64 SPYPLKCQSCRFQRCLDAGMYLEV 87
>U80839-8|AAB37914.1| 238|Caenorhabditis elegans Hypothetical
protein ZC204.10 protein.
Length = 238
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 534 LRKCLKRNALYNIISVLFISYKT 602
LRKCLKR ++ +IS+ F+S KT
Sbjct: 16 LRKCLKRMSVAQLISISFLSKKT 38
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 310 LLSYILN-VNKVHNFINVLPDTRVYLTTASFSGFFYCLV 197
+LSY+L+ V NFI + D+ YLT+ F YC++
Sbjct: 560 VLSYLLSQVQTFDNFIGPVVDSLRYLTSLEFDVLTYCII 598
>Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical
protein ZC482.8 protein.
Length = 375
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 292 NVNKVHNFINVLPD-TRVYLTTASFSGFFYCLVRVVRYT 179
N++K + VL D T+ ASFSGFF LV +V T
Sbjct: 32 NLHKHFELVTVLTDVTKQLYDIASFSGFFLNLVHLVILT 70
>Z81595-8|CAB54305.1| 345|Caenorhabditis elegans Hypothetical
protein T22H2.6b protein.
Length = 345
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 437 IQINSKCSFQKNYVKTNYCIVLFKIKHF 520
I NSK +KN V+ +CI+ F IK+F
Sbjct: 6 INQNSKHITKKNDVRIFFCILYFNIKYF 33
>Z81595-7|CAB54304.1| 358|Caenorhabditis elegans Hypothetical
protein T22H2.6a protein.
Length = 358
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 437 IQINSKCSFQKNYVKTNYCIVLFKIKHF 520
I NSK +KN V+ +CI+ F IK+F
Sbjct: 6 INQNSKHITKKNDVRIFFCILYFNIKYF 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,389,870
Number of Sequences: 27780
Number of extensions: 322582
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -