Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H04
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51720.1 68418.m06414 expressed protein                             81   8e-16
At5g20840.1 68418.m02475 phosphoinositide phosphatase family pro...    30   1.9  
At5g27890.1 68418.m03347 expressed protein                             29   3.3  
At1g60800.1 68414.m06844 leucine-rich repeat family protein / pr...    29   3.3  
At1g15330.1 68414.m01834 CBS domain-containing protein low simil...    28   7.7  

>At5g51720.1 68418.m06414 expressed protein
          Length = 108

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
 Frame = +2

Query: 155 IPPTVVVGGISYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKAS-LCRCW 331
           +P   V GG      Q +   R  G G INP IRK+ +KVVD + + ++++  +  CRCW
Sbjct: 18  LPFKPVTGGEVGRKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCW 77

Query: 332 RSKNWPYCDGSHGPHNKETGDNTGPVVVR 418
           RS  +P CDGSH  HNK  GDN GP++++
Sbjct: 78  RSGTFPLCDGSHVKHNKANGDNVGPLLLK 106


>At5g20840.1 68418.m02475 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 4 (SAC4)  GI:31415724
          Length = 831

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +2

Query: 185 SYYSYQTIKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLC 322
           S + +  ++K +  GS  I    ++D++ V +F+DIE ++   +LC
Sbjct: 706 STHFFGDVQKVQHNGSSSIYLSEQEDMSSVSNFVDIEWLSSSENLC 751


>At5g27890.1 68418.m03347 expressed protein
          Length = 399

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 186 DIPPTTTVGGISANQXLTPRRNHPPTEAGIGKLDRXL 76
           D  P    GGISA+      R+H P+ + +GK  R +
Sbjct: 154 DFRPRGAFGGISASLAAVRTRDHSPSSSEMGKASRQI 190


>At1g60800.1 68414.m06844 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 632

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 206 IKKAREAGSGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWP 349
           +KK  +   G++   I KD+N   D +++E+I + A LC  +   + P
Sbjct: 520 VKKLHQ--EGKLKQLIDKDLNDKFDRVELEEIVQVALLCTQFNPSHRP 565


>At1g15330.1 68414.m01834 CBS domain-containing protein low
           similarity to SP|Q9MYP4 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Sus
           scrofa}; contains Pfam profile PF00571: CBS domain
          Length = 352

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 41  SVVSHLVKVTIPNXLSSLPIPASVGGWFRLG 133
           + +SH +   + N +S+LP+ A  G W   G
Sbjct: 35  ATLSHAMNTLVANSISALPVAAPPGHWIGAG 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,185,636
Number of Sequences: 28952
Number of extensions: 284686
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)