Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H03
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    29   0.36 
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   1.5  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   3.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   3.4  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   5.9  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   7.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   7.8  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 11  MKIRFQTKMEDLSVEVYG--ENGAYYKAIVTDVLDNEVLVAFENDWQPESKF 160
           + + + ++ +DLS+ ++G  +N  +Y+  +  ++        + DW PE +F
Sbjct: 99  ISLNYDSETKDLSIFIHGLWKNTIFYEIPLLALVSESYFKFVDKDWSPEGQF 150


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
 Frame = +2

Query: 29  TKMEDLSVEVYGE---NGAYYKAIVTDVLDNEVLV-AFENDWQPESKFPFSQV--FLPPK 190
           TK E+ +   YG    N    +  + D+LD  +L  + + D Q E+   F+Q    L   
Sbjct: 446 TKGENTANNGYGPQTLNETSEEPSLDDILDTSLLQPSTQTDLQEENSVSFAQEDNSLSRW 505

Query: 191 DTGKHTEFTENQEVEVFARSNEKEACGWWTANIKM--MRGDFLVIEYLEWDNCYTEIVPK 364
           +      F +NQ ++  AR +E     W+T  IK    R   +    +   N    + PK
Sbjct: 506 EKIPIGTFRKNQYIKSMARRDELIRDEWFTLAIKTREKRRHKINATGMTTTNS-VPLRPK 564

Query: 365 DRLRVKLPKTPIDKNTFHK----FEITVPDELKDYAKVENAHKEFXKAIGAAL 511
            R   +  K    K TF +    F+  + DE  D + ++N ++     +G  L
Sbjct: 565 SRKARRALKKKARKMTFRQMHSDFQSALEDEHNDGSYLDNDYETVGLGLGPEL 617


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 430 YFKLVKCVFVYWGLR*FYPKTIF 362
           YF  ++C+   W L+ +YPKT++
Sbjct: 153 YFS-IECLLYLWALKIWYPKTLW 174


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 350 EIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEF 487
           E+ P D L   L      + +F K  + + DE+  YAK+ N+ K+F
Sbjct: 696 EMFP-DHLSKSLSLNASHEFSFKKTMLILIDEVSSYAKLGNSQKKF 740


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 311 LVIEYLEWDNCYTEIVPK 364
           L +EY +W+  + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 104 LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 253
           +D+E+ +  + + QP S FP  Q  L  K +   K +      +  +FA S+
Sbjct: 60  IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 338 NCYTEIVPKDRLRVKL 385
           N YT+IVP D+ RV+L
Sbjct: 462 NRYTDIVPYDKTRVRL 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,261
Number of Sequences: 5004
Number of extensions: 46636
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)