Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H03
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0904 + 21464762-21467479 30 1.1
01_07_0370 - 43119049-43120278,43121376-43121420,43121421-431216... 29 3.4
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 28 4.6
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118... 28 6.0
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201... 27 8.0
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 27 8.0
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477... 27 8.0
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984... 27 8.0
>10_08_0904 + 21464762-21467479
Length = 905
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 113 RCRARR*QWPYNKHHFHRTPRPTNPP 36
+C AR+ QW + HR+PRPT PP
Sbjct: 3 KCAARQRQWRWPL--LHRSPRPTPPP 26
>01_07_0370 - 43119049-43120278,43121376-43121420,43121421-43121662,
43121908-43122686,43123123-43123463,43123565-43123785,
43123866-43124176,43124257-43124516,43124836-43124918,
43124940-43125036,43125132-43125305,43126215-43126592
Length = 1386
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 278 TANIKMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDY 457
TA ++ G L + L W + +VP+D + + T I +N + E+K+
Sbjct: 1192 TAGQVLLDGRDLKLFNLRWLRSHMGLVPQDPV---IFSTTIRENIIYARHNATESEMKEA 1248
Query: 458 AKVENAH 478
A++ NAH
Sbjct: 1249 ARIANAH 1255
>10_02_0167 -
6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 143 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIE 322
+P+S +P S + + G T ++ + +V E+E C W M+ IE
Sbjct: 451 EPDSAYPDSDLHVSHIFGGSTTYSSKREYKKV-----EREVCSTWQGAAPKMKWSEQKIE 505
Query: 323 YLEWDNCYTEIVP 361
+ E D+ T ++P
Sbjct: 506 FSEEDHPKTSVIP 518
>07_03_1689 +
28710936-28711129,28711283-28711341,28711858-28711892,
28712123-28712226,28712325-28712397,28712495-28712553,
28712656-28712721,28712815-28712898,28712995-28713059,
28713152-28713342,28713522-28713612,28714076-28714134,
28714732-28714872,28715214-28715321
Length = 442
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = +2
Query: 317 IEYLEWDNCYT-EIVPKDR 370
++YL++DNCY I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175
>12_01_0278 -
2016172-2016262,2017057-2017140,2017701-2017837,
2017961-2018230,2018306-2018430,2018515-2018646,
2018744-2018821,2019177-2019220,2019803-2019981,
2020168-2020428,2020528-2020655,2020749-2020853,
2020932-2021073
Length = 591
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 323 YLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEFXKAI 499
++EW+ C T + + LR + I +N + E+ +P+ L+ V++ + + A+
Sbjct: 368 FIEWNECATILTSANLLRDSSDENRIAENL--RIEVLLPNNLRTVGTVQHYNLHYNVAL 424
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 146 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 259
P+S+ P+ LPP + K FTE V+ + + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358
>06_01_0658 +
4772855-4772983,4773108-4773218,4773335-4773366,
4773469-4773637,4773728-4773934,4774318-4774362
Length = 230
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = +2
Query: 53 EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEV 232
E+ E G+ Y V +L + V F W FS+ +LP +D E+ E
Sbjct: 120 ELEEELGSDYPIFVKPMLQSHVTGGF---WLSLPTH-FSRKYLPKRDETIRLVDEEDDEF 175
Query: 233 EVFARSNEKEACGWW---TANIKMMRGDFLVIEYLE 331
+ +N++ G W + K++ GD LV + ++
Sbjct: 176 DTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQ 211
>03_06_0274 +
32797541-32797570,32797682-32797769,32798291-32798401,
32798678-32798765,32798918-32799022,32799117-32799617,
32799749-32799884,32800023-32800216,32800306-32800414,
32800803-32800982
Length = 513
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 210 SVCLPVSLGGKKT*ENGNF 154
SVC PVSLGG+ + +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,902,172
Number of Sequences: 37544
Number of extensions: 309748
Number of successful extensions: 858
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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