Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H03
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)               73   2e-13
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)                   29   3.5  
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.5  
SB_33919| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_23759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_16593| Best HMM Match : rve (HMM E-Value=9.3e-16)                   27   8.2  
SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)                 27   8.2  

>SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/83 (43%), Positives = 48/83 (57%)
 Frame = +2

Query: 308 FLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEF 487
           F VI+Y  WD  + EIVP++R+R       I +  ++K  I VP +LK+  K EN H+EF
Sbjct: 18  FFVIQYSGWDATFNEIVPRERIRPPNTNGSISRQMYYKVMIDVPPDLKNICKDENTHREF 77

Query: 488 XKAIGAALVWYVPERAVLAVLSR 556
            K + AA V Y     VL VLSR
Sbjct: 78  KKQVNAACVGYNENLNVLVVLSR 100



 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 35 MEDLSVEVYGENGAYYKAIV 94
          ME+L+VEV G+NGA+YK  V
Sbjct: 1  MEELAVEVCGKNGAFYKFFV 20


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -3

Query: 349 RITVIPF*IFYHKEITPHHLDICSPP-----PTRFFLIRPSKYF 233
           R+ +  F  FYH   +   + + SP      PTRFF +  S+YF
Sbjct: 717 RLKIPEFYHFYHTSYSNSRVSVISPTTMFVSPTRFFRLNRSRYF 760


>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
          Length = 892

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 365 DRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEFXKAI 499
           D+ R +L + P DK+   KFE T+    K   KV +AH +  K +
Sbjct: 819 DKARTQLREHPFDKDIQRKFETTL---AKIKTKVLSAHSQLKKEV 860


>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 365 DRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKEFXKAI 499
           D+ R +L + P DK+   KFE T+    K   KV +AH +  K +
Sbjct: 106 DKARTQLREHPFDKDIQRKFETTL---AKIKTKVLSAHSQLKKEV 147


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 332 WDNCYTEIVPKDRLRVK--LPKTPIDKNTFHKF 424
           W NC++ I+  D+++V   +  + +DK + HKF
Sbjct: 363 WQNCHSCILENDKVKVAQGVSGSVVDKGSIHKF 395


>SB_33919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 94  DNGLIISTIFTVHLDRQILHFGLKAYFH 11
           D+ L++S +FT H+ R+ LH   +  FH
Sbjct: 26  DHSLVVSGVFTAHVYRRRLHKAQEYSFH 53


>SB_23759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 83  KAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEF 214
           +A+    L+ EVL   E  WQ ++K    Q + P      H EF
Sbjct: 44  EAVKIIYLETEVLTVLEEVWQHQNKTVLLQFWSPEATAKLHAEF 87


>SB_16593| Best HMM Match : rve (HMM E-Value=9.3e-16)
          Length = 783

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 15  KYAFKPKWRICRSRCTVKMVLIIRPLSPTCSTTRF**PLKMTGSQNQSFRFLKFSYHLKT 194
           K+ F PK R       V +  ++ P+           PLK   S  +     +FS H + 
Sbjct: 451 KHGFTPKARESDIPLVVTLT-VVPPVDTEALGMTLGVPLKQKLSARERALLFRFSNHAEY 509

Query: 195 LANTQNLLRTR 227
           +   QN++RTR
Sbjct: 510 VVYRQNVVRTR 520


>SB_14941| Best HMM Match : SH3_1 (HMM E-Value=1.1e-12)
          Length = 469

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 20/88 (22%), Positives = 33/88 (37%)
 Frame = +2

Query: 188 KDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIEYLEWDNCYTEIVPKD 367
           KD        E + VEV  +S +    GWW    +     +    YL+ +   +  + K 
Sbjct: 201 KDDDSEVSLKEGETVEVLEQSED----GWWLVRTQNFSVGWAPSNYLDKNPTVSYCMRKP 256

Query: 368 RLRVKLPKTPIDKNTFHKFEITVPDELK 451
            ++ K P  P      +K  + V  E K
Sbjct: 257 SIKGKPPTRPPKSMMVYKKAMMVAAEQK 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,997,979
Number of Sequences: 59808
Number of extensions: 340168
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)