Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H03
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92777-8|CAJ58494.1| 293|Caenorhabditis elegans Hypothetical pr... 28 4.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 4.1
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 27 7.2
U88175-4|AAB42279.1| 440|Caenorhabditis elegans Hypothetical pr... 27 7.2
U64853-1|AAB04974.2| 517|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical pr... 27 9.5
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z92777-8|CAJ58494.1| 293|Caenorhabditis elegans Hypothetical
protein C17H1.13 protein.
Length = 293
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +2
Query: 5 RPMKIRFQTKMEDLSVEVYGENGAYYKAIVTDVLD---NEVLVAFENDWQPESKFPFSQV 175
R K QTK E++ +++ + G KA+ D+L+ N + ++ W SK + V
Sbjct: 93 REQKFIHQTKCEEIDLKMKLKQGDLAKAVRNDILEEKYNSTVQHVKHIWALISK-AVTVV 151
Query: 176 FLPPKDTGKHTEFTENQEVEVFARSNEKE 262
+ K T T N+E+ V N+ +
Sbjct: 152 HKSLSNDDKQTISTRNREILVTLVKNKMD 180
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 EACGWWTANIKMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVP 439
EA G T + +++ L E + Y +++ + L +TPID +KF VP
Sbjct: 567 EATGTETVLLSILQLMTLTNEDMSTKRSYMKLIETAISDILLHRTPIDPQADYKFVFEVP 626
Query: 440 -DELKDYAKVENAHKEFXKAIGA 505
E+ D + E K+ +A A
Sbjct: 627 VAEIIDKMQDEEMAKKVRQATSA 649
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 EACGWWTANIKMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVP 439
EA G T + +++ L E + Y +++ + L +TPID +KF VP
Sbjct: 567 EATGTETVLLSILQLMTLTNEDMSTKRSYMKLIETAISDILLHRTPIDPQADYKFVFEVP 626
Query: 440 -DELKDYAKVENAHKEFXKAIGA 505
E+ D + E K+ +A A
Sbjct: 627 VAEIIDKMQDEEMAKKVRQATSA 649
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 EACGWWTANIKMMRGDFLVIEYLEWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVP 439
EA G T + +++ L E + Y +++ + L +TPID +KF VP
Sbjct: 150 EATGTETVLLSILQLMTLTNEDMSTKRSYMKLIETAISDILLHRTPIDPQADYKFVFEVP 209
Query: 440 -DELKDYAKVENAHKEFXKAIGA 505
E+ D + E K+ +A A
Sbjct: 210 VAEIIDKMQDEEMAKKVRQATSA 232
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 216 VNSVCLPVSLGGKKT*ENGNFDSGCQSFSKATRTSLS 106
++ VCLP++ G NG F + C+ A+R+ L+
Sbjct: 273 ISDVCLPLNYGVGLELSNGVFINSCEPNGAASRSGLA 309
>U88175-4|AAB42279.1| 440|Caenorhabditis elegans Hypothetical
protein F21F3.2 protein.
Length = 440
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/79 (20%), Positives = 35/79 (44%)
Frame = +2
Query: 32 KMEDLSVEVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTE 211
K+E++ + G YK I+ + + ++ A + W + + F +FL ++ KH
Sbjct: 22 KIEEVHLHSCGVFSNVYKGILREPYEKKI--AIKKSWPEKGERNFEFIFLTGRERAKHKN 79
Query: 212 FTENQEVEVFARSNEKEAC 268
+ F+ S + + C
Sbjct: 80 VI--HMIFAFSHSYDTKVC 96
>U64853-1|AAB04974.2| 517|Caenorhabditis elegans Hypothetical
protein K11G9.3 protein.
Length = 517
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 188 KDTGKHTEFTENQEVEVFARSNE 256
KDTG H E T N+ +E ++R+ E
Sbjct: 326 KDTGDHFEATRNKIIEFYSRNVE 348
>Z74473-2|CAA98949.2| 319|Caenorhabditis elegans Hypothetical
protein F56H9.1 protein.
Length = 319
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/78 (28%), Positives = 32/78 (41%)
Frame = -1
Query: 384 NFTLRRSLGTISV*QLSHSRYSITRKSPLIILIFAVHHPHASFSLDLANTSTSWFSVNSV 205
N L +++G Q ++ IT L+I H P S + L S SW +V +
Sbjct: 79 NTYLNQTMGLGMYLQGPITQMIITINRFLVIWFTPTHVPQYSHRITLGALSVSWITVTWL 138
Query: 204 CLPVSLGGKKT*ENGNFD 151
+ L G N NFD
Sbjct: 139 STLIGLPGFD--NNNNFD 154
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 134 NDWQPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKE 262
+DW PE K +V P++ K + E +E E A EKE
Sbjct: 33 DDWAPEKKKRAKKVPSKPREGPKLIDEFEEKESEKEAAEKEKE 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,667,674
Number of Sequences: 27780
Number of extensions: 270576
Number of successful extensions: 711
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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