Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H03
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putativ...    29   2.9  
At3g17620.1 68416.m02251 F-box family protein contains Pfam prof...    28   5.0  
At1g23870.1 68414.m03011 glycosyl transferase family 20 protein ...    28   5.0  
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac...    27   6.7  
At4g04260.1 68417.m00603 bromo-adjacent homology (BAH) domain-co...    27   6.7  
At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein con...    27   6.7  
At4g27570.1 68417.m03960 glycosyltransferase family protein cont...    27   8.8  

>At1g70290.1 68414.m08087 trehalose-6-phosphate synthase, putative
           similar to Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] (EC 2.4.1.15) (Trehalose-6-phosphate
           synthase) from {Kluyveromyces lactis} SP|Q07158,
           {Saccharomyces cerevisiae} SP|Q00764; contains Pfam
           profiles PF00982: Glycosyltransferase family 20,
           PF02358: Trehalose-phosphatase
          Length = 856

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 128 FENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 259
           FE  W  + K    Q+  P + +GK  E  + +  E   R NE+
Sbjct: 358 FETYWHLKGKVVLVQIVNPARSSGKDVEEAKRETYETARRINER 401


>At3g17620.1 68416.m02251 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 398

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/112 (19%), Positives = 46/112 (41%)
 Frame = +2

Query: 149 ESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIEYL 328
           E +F   +++    ++ +  + T + EVE +AR    +   +W A  K       +I  +
Sbjct: 172 EEEFVEYEIYELKSNSWRVLDVTSDWEVEFYARGVSLKGNTYWFATDKFPEISSNLIHSV 231

Query: 329 EWDNCYTEIVPKDRLRVKLPKTPIDKNTFHKFEITVPDELKDYAKVENAHKE 484
            +  C+     +   R+ LP  P+D +T     +        + + +N H E
Sbjct: 232 YFLLCFNFTSERFGPRLHLPCYPMDVDTVSLSSVREEQLAVLFQRKDNLHME 283


>At1g23870.1 68414.m03011 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 867

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 128 FENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 259
           FE  W    K    Q+  P + TGK  E  + +      R NE+
Sbjct: 360 FETYWHMRGKLVLIQIVNPARATGKDVEEAKKETYSTAKRINER 403


>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
           homology (BAH) domain-containing protein contains Pfam
           domain, PF00628: PHD-finger and PF01426: BAH domain
          Length = 196

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 185 PKDTGKHTEFTENQEVEVFARSNEKEACGWW 277
           P D GK       +++E  AR+N K  C W+
Sbjct: 3   PSDAGKPPYVARVEKIEADARNNVKVHCRWY 33


>At4g04260.1 68417.m00603 bromo-adjacent homology (BAH)
           domain-containing protein similar to ES43 [Hordeum
           vulgare] GI:1345528; contains Pfam profile PF01426: BAH
           domain
          Length = 193

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 185 PKDTGKHTEFTENQEVEVFARSNEKEACGWW 277
           P D GK       +++E  AR+N K  C W+
Sbjct: 3   PSDAGKAPYVARVEKIEADARNNVKVHCRWY 33


>At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to thioglucosidase (GI:871992) [Arabidopsis
           thaliana]
          Length = 511

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 155 LILAASHFQRLLEPRCRARR*QWPYNKHHFHRTPRPTNPPF 33
           L +  S  Q++  P C+A+      N H F+RT  P N  F
Sbjct: 16  LFVVVSSSQKVCNPECKAKEPFHCDNTHAFNRTGFPRNFTF 56


>At4g27570.1 68417.m03960 glycosyltransferase family protein
           contains Pfam profile: PF00201 UDP-glucoronosyl and
           UDP-glucosyl transferase
          Length = 453

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 255 SLDLANTSTSWFSVNSVCLPVSLGGKKT*ENGN 157
           S+++A   T WFS  S+C  V+   K+  E GN
Sbjct: 381 SVEVAREETGWFSKESLCDAVNSVMKRDSELGN 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,873,972
Number of Sequences: 28952
Number of extensions: 249910
Number of successful extensions: 652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)