Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_H01
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 295 3e-81
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 295 5e-81
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 27 2.7
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 27 2.7
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 4.7
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.2
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 6.2
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 26 6.2
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 8.2
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 8.2
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 8.2
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 295 bits (725), Expect = 3e-81
Identities = 145/211 (68%), Positives = 165/211 (78%), Gaps = 1/211 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLRASIEKGA-QVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR +I G QVVA+NDPFI LDYM Y+FKYDSTHGRF+GSVE +
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++G+ I V +ERDP I W +GAEYV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLXAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 623
S DAPMFVVGVNL ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 125 SKDAPMFVVGVNLEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 624 XXXXDGPSGKLWRDGRGAQQNIXPASTGAAK 716
DGPS K WR GRGA NI P+STGAAK
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 295 bits (723), Expect = 5e-81
Identities = 144/211 (68%), Positives = 165/211 (78%), Gaps = 1/211 (0%)
Frame = +3
Query: 87 KIGINGFGRIGRLVLR-ASIEKGAQVVAINDPFIGLDYMVYLFKYDSTHGRFKGSVEVQD 263
K+GINGFGRIGR+VLR A + K QVVAINDPFI L+YM Y+FKYDSTHGRF GSVE++D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 264 GFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFTTTDKASAHLEGGAKKVIISAP 443
G LV++GN I V +ERDP I W +GA+YV+ESTGVFTT + ASAHL+GGAK+VIISAP
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124
Query: 444 SADAPMFVVGVNLXAYDPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXX 623
S DAPM+VVGVN ++PS KVISNASCTTNCLAPLAKVI+D F I EGLM
Sbjct: 125 SKDAPMYVVGVNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTAT 184
Query: 624 XXXXDGPSGKLWRDGRGAQQNIXPASTGAAK 716
DGPS K WR GRGA NI P+STGAAK
Sbjct: 185 QKTVDGPSKKDWRGGRGASANIIPSSTGAAK 215
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNKFSITCREHVKN 91
LHLVL +RGGG+ K + T + +K+
Sbjct: 67 LHLVLRLRGGGKKRKKKTYTTPKKIKH 93
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNKFSITCREHVKN 91
LHLVL +RGGG+ K + T + +K+
Sbjct: 67 LHLVLRLRGGGKKRKKKTYTTPKKIKH 93
>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 452 ISTGS*YNNFFSTSLQVSRCFICSGKDTSRLYNIFSPSFSPRNGLRVPF*E-NSNFVTIN 276
+ +G +N +S + C +C G + ++ +P F R +R+P N N TI
Sbjct: 153 VCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIAPGF--RQQMRMPCNACNGNGRTIK 210
Query: 275 NK 270
+K
Sbjct: 211 HK 212
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 338 FSPRNGLRVPF*ENSNFVTINNKESILNLNT 246
FSP V E+++ +++N +S+ NLN+
Sbjct: 67 FSPSKATTVSLKESASLTSLSNNKSVSNLNS 97
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 43 SVIQQIFYNLPRTCQKLESMDL 108
+++QQI +NL R CQ + + D+
Sbjct: 245 NILQQIRFNLERICQDIGNFDV 266
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 67 LHLVLRLRGGMQIFVK 82
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 143 LHLVLRLRGGMQIFVK 158
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 219 LHLVLRLRGGMQIFVK 234
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 11 LHLVLNVRGGGQLFNK 58
LHLVL +RGG Q+F K
Sbjct: 295 LHLVLRLRGGMQIFVK 310
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 102 GFGRIGRLVLRASIEKGAQVVAINDPFIGLDYMVYLF 212
GF RI +R EKG QVV D I + + +L+
Sbjct: 298 GFVRIESQKIRQHAEKGEQVVFTGDRVIQTNVVPFLY 334
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 50 FNKFSITCREHVKNWNQWIWP 112
FN SI R V W QWI+P
Sbjct: 244 FNLHSICDRNTVHMWLQWIFP 264
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 8.2
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 293 NFVTINNKESILNLNTALKTAMGGIILEKINHIVK---TDERVIYSDHLS 153
+F + N+ESIL+L L + + E I++IV+ +D R HLS
Sbjct: 338 SFKKLQNEESILHLLNILHSIFEYTVPEAIDNIVQSKTSDARTSEIQHLS 387
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,322
Number of Sequences: 5004
Number of extensions: 57196
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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