Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_H01
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)             259   1e-69
SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)            32   0.53 
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)                 29   5.0  

>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score =  259 bits (635), Expect = 1e-69
 Identities = 119/172 (69%), Positives = 136/172 (79%)
 Frame = +3

Query: 201  VYLFKYDSTHGRFKGSVEVQDGFLVVNGNKIAVFSERDPKAIPWGKAGAEYVVESTGVFT 380
            VY+FKYDSTHGRFKG+VE +DG LV+NG  ++VF+ +DP  IPWG+ GA+YVVESTGVFT
Sbjct: 817  VYMFKYDSTHGRFKGTVEAKDGKLVINGKPVSVFACKDPTQIPWGETGADYVVESTGVFT 876

Query: 381  TTDKASAHLEGGAKKVIISAPSADAPMFVVGVNLXAYDPSFKVISNASCTTNCLAPLAKV 560
            T +KA  HL+GGAKKVIISAPSADAPMFV+GVN   YDPS  V+SNASCTTNCLAPL KV
Sbjct: 877  TLEKAGFHLKGGAKKVIISAPSADAPMFVMGVNHEKYDPSMTVVSNASCTTNCLAPLVKV 936

Query: 561  IHDNFEIVEGLMXXXXXXXXXXXXXDGPSGKLWRDGRGAQQNIXPASTGAAK 716
            I+DNF + EGLM             DGPS K WRDGRGA QN+ PASTGAAK
Sbjct: 937  INDNFGLEEGLMTTIHAYTATQKTVDGPSAKNWRDGRGAHQNVIPASTGAAK 988


>SB_15451| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.7)
          Length = 277

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 439 LPVLMPPCLLWVLTXKLMTPLLRSSQMLL 525
           +PV+MP CL  +   K+M PLL  +++LL
Sbjct: 194 IPVIMPHCLAAMSCGKVMAPLLAKAELLL 222


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
 Frame = +1

Query: 229 MAVLRAVLRFRMDSLLLMVTKL-LFSQKGTLRPFRGEKLGLNML*SLLVSLPLQIKHLLT 405
           +A L+ V+  ++ + L ++T L + +    L P +     L +L  L V +PLQ+   LT
Sbjct: 380 LAPLQVVITLQVLTSLQVLTSLQVLTSLQVLTPLQ-VPTPLQVLIPLQVLIPLQV---LT 435

Query: 406 WREVLKKLLYQLP--VLMPPCLLWVLTXKLMTPLLRSSQMLLAPQTVLPHLQRLFMI 570
             +VL  L   LP  VL+P  +L  L   +   +L   Q+L  PQ + P LQ L ++
Sbjct: 436 PLQVLIPLQVLLPLQVLIPLQVLTPLQVLITLQVLTPPQVLTPPQVLAP-LQVLILL 491


>SB_20220| Best HMM Match : E-MAP-115 (HMM E-Value=2.1)
          Length = 405

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 436 DIITFLAPPSK*ADALSVVVKTPVDSTTYSAPAFPHGMALGSLSE 302
           D+I  +A P + A A S    T V S +Y+  AFP G    S S+
Sbjct: 175 DVIERMAAPPRDAPATSTPCPTRVLSPSYALAAFPTGENASSSSQ 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,507,013
Number of Sequences: 59808
Number of extensions: 421786
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)