Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G24
(635 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 141 4e-34
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 128 2e-30
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 128 2e-30
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 112 2e-25
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 103 1e-22
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 103 1e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 97 7e-21
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 97 7e-21
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 97 7e-21
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 86 2e-17
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 80 1e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 74 7e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 71 9e-13
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 69 3e-12
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 63 2e-10
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 62 3e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 61 7e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 60 2e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 59 2e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 58 4e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 57 9e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 56 3e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 55 5e-08
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 54 8e-08
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 54 8e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 54 1e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 4e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 50 1e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 49 3e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 49 3e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 7e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 9e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 47 1e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 46 2e-05
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 46 2e-05
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 3e-05
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 44 6e-05
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 44 6e-05
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 44 6e-05
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 43 1e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 43 1e-04
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 43 1e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 42 3e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 42 5e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 5e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 37 0.013
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 37 0.013
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.023
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 36 0.023
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 35 0.052
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 34 0.091
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 32 0.37
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 0.64
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 31 0.85
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 30 1.1
At3g42725.1 68416.m04461 expressed protein 30 1.1
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 30 1.1
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 30 1.1
At2g25460.1 68415.m03049 expressed protein 30 1.1
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 30 1.1
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 29 3.4
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 29 3.4
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.5
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.5
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 6.0
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 6.0
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.0
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.0
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.0
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 7.9
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 27 7.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 141 bits (341), Expect = 4e-34
Identities = 63/122 (51%), Positives = 84/122 (68%)
Frame = +2
Query: 260 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 439
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 440 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINN 619
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L G+ +TGSGKTL+Y+LP IVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 620 QP 625
QP
Sbjct: 164 QP 165
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 128 bits (310), Expect = 2e-30
Identities = 53/111 (47%), Positives = 80/111 (72%)
Frame = +2
Query: 293 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 472
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 473 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQP 625
+G+ EPTPIQAQGWP+A+ G++L G+ +TGSGKTLAY+LP +VH++ QP
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 128 bits (310), Expect = 2e-30
Identities = 53/111 (47%), Positives = 80/111 (72%)
Frame = +2
Query: 293 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 472
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 473 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQP 625
+G+ EPTPIQAQGWP+A+ G++L G+ +TGSGKTLAY+LP +VH++ QP
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQP 231
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 112 bits (269), Expect = 2e-25
Identities = 46/119 (38%), Positives = 75/119 (63%)
Frame = +2
Query: 278 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 457
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPPIR 634
+ +K Y++PT IQ Q PI +SG+++ G+ +TGSGKT A++LP IVHI +QP ++
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQ 297
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 103 bits (247), Expect = 1e-22
Identities = 46/118 (38%), Positives = 70/118 (59%)
Frame = +2
Query: 278 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 457
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPPI 631
+ +K + Y++P PIQAQ PI MSG++ GV +TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 464
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 103 bits (246), Expect = 1e-22
Identities = 45/118 (38%), Positives = 70/118 (59%)
Frame = +2
Query: 278 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 457
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPPI 631
+ +K + Y++P PIQ Q PI MSG++ GV +TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPV 597
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 97.5 bits (232), Expect = 7e-21
Identities = 42/96 (43%), Positives = 60/96 (62%)
Frame = +2
Query: 326 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 505
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 506 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI 613
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 97.5 bits (232), Expect = 7e-21
Identities = 42/96 (43%), Positives = 60/96 (62%)
Frame = +2
Query: 326 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 505
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 506 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI 613
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 97.5 bits (232), Expect = 7e-21
Identities = 42/96 (43%), Positives = 60/96 (62%)
Frame = +2
Query: 326 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 505
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 506 QAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI 613
QAQ WPIAM G+++ + +TGSGKTL Y++P +H+
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL 220
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 4/104 (3%)
Frame = +2
Query: 308 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 475
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 476 TMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIV 607
+ G+ PTPIQAQ WPIA+ +++ + +TGSGKTL Y++P +
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/97 (37%), Positives = 60/97 (61%)
Frame = +2
Query: 317 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 496
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 497 TPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIV 607
TPIQ QG P+ +SG+++ G+ TGSGKTL ++LP I+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 74.1 bits (174), Expect = 7e-14
Identities = 34/96 (35%), Positives = 58/96 (60%)
Frame = +2
Query: 320 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 499
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 500 PIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIV 607
PIQ QG P+ ++G+++ G+ TGSGKTL ++LP I+
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 70.5 bits (165), Expect = 9e-13
Identities = 27/87 (31%), Positives = 53/87 (60%)
Frame = +2
Query: 371 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLX 550
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + +++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 551 GVXQTGSGKTLAYILPXIVHINNQPPI 631
G+ +TGSGKT A++LP + +I+ PP+
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPM 381
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = +2
Query: 359 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 532
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 533 SGKNLXGVXQTGSGKTLAYILPXIVHI 613
G++L G+ +TGSGKTLA+ +P I+H+
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHV 176
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +2
Query: 374 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 541
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 542 NLXGVXQTGSGKTLAYILPXIVHI 613
TGSGKT A+I P ++ +
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKL 203
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +2
Query: 470 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI 613
V + G+ P+PIQAQ WPIAM +++ + +TGSGKTL Y++P +H+
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 454
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +2
Query: 392 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGS 571
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 572 GKTLAYILPXIVHINNQP 625
GKT A+ LP + + +P
Sbjct: 216 GKTAAFALPTLERLLFRP 233
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 59.7 bits (138), Expect = 2e-09
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +2
Query: 263 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 433
N R WD + PF + +P P ++ + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 434 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
E + + + ++ Y +PTP+Q PI + G++L QTGSGKT A+ P I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPII 218
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 350 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 523
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 524 IAMSGKNLXGVXQTGSGKTLAYILPXI 604
A++GK+L TGSGKT ++++P I
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPII 169
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 58.4 bits (135), Expect = 4e-09
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Frame = +2
Query: 263 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 433
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 434 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
E + + + ++ Y +PTP+Q PI +G++L QTGSGKT A+ P I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPII 205
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/66 (37%), Positives = 38/66 (57%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE N V +K GYK PTPIQ + P+ +SG ++ + +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 611 INNQPP 628
+ P
Sbjct: 90 LKQHVP 95
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/102 (29%), Positives = 51/102 (50%)
Frame = +2
Query: 299 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 478
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 479 MGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
MG+ T IQA+ P M G+++ G +TGSGKTLA+++P +
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.8 bits (126), Expect = 5e-08
Identities = 31/82 (37%), Positives = 43/82 (52%)
Frame = +2
Query: 359 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 538
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 539 KNLXGVXQTGSGKTLAYILPXI 604
K++ +TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.0 bits (124), Expect = 8e-08
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +2
Query: 263 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 433
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 434 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
+ + D + ++ Y PTP+Q PI ++ ++L QTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 54.0 bits (124), Expect = 8e-08
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Frame = +2
Query: 263 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 433
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 434 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
+ + D + ++ Y PTP+Q PI ++ ++L QTGSGKT A+ P I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/66 (34%), Positives = 41/66 (62%)
Frame = +2
Query: 407 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLA 586
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK++ G+ QTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 587 YILPXI 604
+ +P +
Sbjct: 63 FAIPIL 68
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE ++ + K +G ++PTP+Q P ++G+++ G+ QTGSGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 611 INNQP 625
+ P
Sbjct: 120 LAEDP 124
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/50 (42%), Positives = 33/50 (66%)
Frame = +2
Query: 479 MGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPP 628
MG++ PT +QAQ P+ +SG+++ TG+GKT+AY+ P I H+ P
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSP 97
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/67 (29%), Positives = 41/67 (61%)
Frame = +2
Query: 422 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPX 601
++ F + D ++G+K Y + T +Q+ P A+ G+++ G +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 602 IVHINNQ 622
+ ++ +
Sbjct: 130 LEKLHRE 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/92 (31%), Positives = 48/92 (52%)
Frame = +2
Query: 350 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 529
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 530 MSGKNLXGVXQTGSGKTLAYILPXIVHINNQP 625
+ G +L G +TG GKTLA++LP + + N P
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FEE PD + ++ G+ PT +Q+ P + G + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 611 I 613
I
Sbjct: 172 I 172
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
F++ +G++ G+K T +Q P+ + GK++ +TG+GKT+A++LP I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 611 INNQPP 628
+ PP
Sbjct: 142 VIKAPP 147
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/81 (27%), Positives = 44/81 (54%)
Frame = +2
Query: 362 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 541
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 542 NLXGVXQTGSGKTLAYILPXI 604
++ G +TGSGKTLA+++P +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAV 148
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/55 (36%), Positives = 33/55 (60%)
Frame = +2
Query: 464 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPP 628
+ +K GY+ T +Q PI + GK++ +TG+GKT+A++LP I + PP
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 422 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPX 601
++ F+E + V ++ + + PT IQ G P M K++ TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 602 I 604
+
Sbjct: 171 V 171
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE+ + G+ G++ P+PIQ + PIA++G+++ + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 611 IN 616
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE+ + G+ G++ P+PIQ + PIA++G+++ + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 611 IN 616
I+
Sbjct: 193 ID 194
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 464 QGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQPP 628
+ +K G++ T +Q PI + GK++ +TG+GKT+A++LP I + PP
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPP 449
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 611 IN 616
I+
Sbjct: 186 ID 187
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 611 IN 616
I+
Sbjct: 186 ID 187
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 44.4 bits (100), Expect = 6e-05
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
FE+ + +G+ G+++P+PIQ + PIA++G ++ + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 611 IN 616
I+
Sbjct: 216 ID 217
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 449 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQ 622
P+++ ++ +G+ PT IQ + P +G++ QTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVH 610
F E + + + +K + P IQA + + GK+ Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 611 INNQ 622
+ +
Sbjct: 436 LREE 439
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 419 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKT--LAYI 592
PI+ F++ D V +GV GYK+P+ IQ + + G+++ Q+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 593 LPXIVHINNQ 622
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLXGVXQTGSGKTLAYILPXI 604
+ + + + +KEPT IQ + +A GK++ G +TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 482 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI---NNQPP 628
G++ TP+QA+ P S K++ TGSGKTLA++LP I I N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.5 bits (93), Expect = 5e-04
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Frame = +2
Query: 482 GYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHI---NNQPP 628
G++ TP+QA+ P S K++ TGSGKTLA++LP I I N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 452 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINN 619
D V ++ G+ P+ QA P +SGK++ +TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
+ + +K G ++ PIQ AM G+++ G +TG+GKTLA+ +P I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +2
Query: 392 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGS 571
T G+E PI F + + V +GV G+++P+ IQ + + G+++ Q+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 572 GKT 580
GKT
Sbjct: 84 GKT 86
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 497 TPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
TP+QA P+ S K++ TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 458 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
+ + + + G ++ PIQ AM G+++ G +TG+GKTLA+ +P I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +2
Query: 443 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIVHINNQ 622
+ P +++ ++ G PIQ A+ G+++ +TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +2
Query: 512 QGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
Q P A++GK+L TGSGKT ++++P I
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = +2
Query: 458 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLXGVXQTGSGKTLAYILPXIVHINNQP 625
+++ ++ MG P+Q W I G +++ TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 626 PIR 634
P+R
Sbjct: 91 PVR 93
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.1 bits (67), Expect = 0.64
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Frame = +2
Query: 308 NKNFYDPH---PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 469
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 470 VKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
+ G + T +Q + GK+ +TG+GK++A++LP I
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = +2
Query: 407 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLA 586
EVH + F+ + + +G+ G+++P+ IQ +G G ++ Q+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 587 Y 589
+
Sbjct: 93 F 93
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 461 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILP 598
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +3
Query: 186 LGLATVAIDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFMIHILQFSKDHHMKS 365
LGLA +A+ L L + G +S + R+C I H + T F+ ++ FS++ +S
Sbjct: 44 LGLAFLAVSLVSLISSFGSASSHQSRSCFI-ARITLHVSSLTGQFIAVLMLFSRE--KQS 100
Query: 366 KSIEINTR 389
S+ I+TR
Sbjct: 101 LSLLISTR 108
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +2
Query: 365 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 544
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 545 LXGVXQTGSGKTLAY 589
+ Q+G+GKT +
Sbjct: 79 VIQQAQSGTGKTATF 93
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +2
Query: 380 KHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVX 559
K V +S + P Y E D + G K P+Q Q +M K+ +
Sbjct: 170 KPSVQISNKDHETP-SYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLM 228
Query: 560 QTGSGKTLAYILP 598
TG GK+L Y LP
Sbjct: 229 PTGGGKSLCYQLP 241
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 239 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 123
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 431 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXI 604
F+E+ + + G + T +Q + GK+ +TG+GK++A++LP I
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 449 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAY 589
PD ++ G+ G+++P+ IQ +G G ++ Q+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 473 KTMGYKEPTPIQAQGWPIAMSGKNLXGVXQTGSGKTLAYILPXIV 607
K G P Q + MSG ++ + TG GK+L Y LP ++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 311 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 466
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 311 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 466
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 263 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 430
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 431 FEE 439
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 263 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 430
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 431 FEE 439
EE
Sbjct: 811 NEE 813
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 320 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 496
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 497 TPIQAQGWPIAMS 535
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 320 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 496
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 497 TPIQAQGWPIAMS 535
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 320 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 496
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 497 TPIQAQGWPIAMS 535
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 7.9
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 120 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 266
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 334 RMWIIKVFVERLE*NRIPIWASHVLPSREFF 242
R+W F E ++ W +HVLP+RE +
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,561,467
Number of Sequences: 28952
Number of extensions: 248568
Number of successful extensions: 755
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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