Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 97 1e-21
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 39 7e-04
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 38 0.001
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 34 0.021
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 29 0.59
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 28 1.0
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 27 1.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.4
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.4
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 27 3.1
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 26 4.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 4.1
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 7.2
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 7.2
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.5
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 25 9.5
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.5
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 9.5
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 97.5 bits (232), Expect = 1e-21
Identities = 57/177 (32%), Positives = 97/177 (54%), Gaps = 5/177 (2%)
Frame = +1
Query: 139 KNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEA---VKQNT 309
+N + DE KY + L K+++RE VDL+DL+E + T+ ++ N
Sbjct: 37 QNQDISMSDAGDEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSDTQLLHNIESNA 96
Query: 310 RRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNR-YPP 486
+R+ + S ++P + + LDV ++ R+ RN I DP ++ +PP
Sbjct: 97 KRFVELFSQCADALMPPPTVEINYRNEVLDVIMQQRVQ---RNENI-----DPEHKGFPP 148
Query: 487 ELIRRFEVYFKDLSTSKS-VPIREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
EL R +++YF+ ++ +K +R+++ E++G L TVRGIVTR +DVKP L V Y+C
Sbjct: 149 ELTRGYDLYFRPVTRNKKPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVNAYTC 205
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 547 IREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
IR+++ + IG+L T+ G VTR ++V+P L T+ C
Sbjct: 198 IRDLRTDRIGRLTTITGTVTRTSEVRPELAQGTFIC 233
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 502 FEVYFKDLSTSKSVPIREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
F V F+ V R ++A H+ K+ ++ GIVTRC+ V+P ++ + + C
Sbjct: 102 FYVGFRGSFGDHHVNPRTLRAMHLNKMISLEGIVTRCSFVRPKVIKSVHYC 152
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 457 MRDPRNRYPPELIRR---FEVY-FKDLSTSKSVPIREVKAEHIGKLXTVRGIVTRCTDVK 624
M D PPE + ++Y + + K + +R++ I KL +++G+V RCT V
Sbjct: 257 MLDLLGTNPPEDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISIKGLVLRCTPVI 316
Query: 625 PLLVVATYSC 654
P + A + C
Sbjct: 317 PDMKQAFFRC 326
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 547 IREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
+R+++ H+ L V G+VTR T + P L ++C
Sbjct: 299 LRDLRQSHLNCLVRVSGVVTRRTGLFPQLKYIRFTC 334
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -3
Query: 212 VSCSAYLKYFFPSSSV*QKSTKKFLKDSLSAV 117
V+ LK+ F S S Q ST+KFL ++LSAV
Sbjct: 291 VTYDTLLKHPFGSLSDAQSSTEKFLSNTLSAV 322
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/80 (17%), Positives = 34/80 (42%)
Frame = +1
Query: 268 EMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRI 447
E + + + + ++++ + ++E LP + + + D+Y + + +H
Sbjct: 203 EHKNSIEKKISNVDKPISDLIENDIHESLPALQNPPIQSHSETDLYADEELDSILMHHER 262
Query: 448 PGEMRDPRNRYPPELIRRFE 507
P PR EL+ +FE
Sbjct: 263 PPIPESPRVEEFEELLNQFE 282
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 292 AVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPR 471
A+ +++R Y VS + LP + + +++ + HR+ E+ ++R GE
Sbjct: 88 AMSRSSRYY---VSSELKATLPSLDGRRLSKRNAANHASHHRMPDESASYRTRGEYESSS 144
Query: 472 NRYPPELIRRF 504
R P + +RR+
Sbjct: 145 PRVPQKSLRRY 155
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/68 (23%), Positives = 32/68 (47%)
Frame = +1
Query: 151 VDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMV 330
+ TD++ + E+ ++ RE+ +D+L + E LT+A + RR ++
Sbjct: 280 IPVASTDEQLFNAHQLLEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLE 339
Query: 331 SDVVYEML 354
+ EML
Sbjct: 340 ERMSKEML 347
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 199 AEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEV 378
A TK +A + + +LH+ E + V Q Y N +D M+ D K ++
Sbjct: 65 ATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKTDKPAPMISD-KIYDI 123
Query: 379 VA--KDSLD 399
V KD LD
Sbjct: 124 VMKHKDELD 132
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 175 EGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVY 345
E KK+++YA++L + A +QI +D + + +D AV + R N +V+
Sbjct: 242 ELKKFWEYADKLCQFAKEKQIPLFIDAEQTY--FQDCMHAVTVDLMRKYNKEVAIVH 296
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 541 VPIREVKAEHIGKLXTVRGIV 603
+PIR + A HI KL V GI+
Sbjct: 130 LPIRNLTASHISKLVRVPGII 150
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 379 VAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKD 522
+AK S+ + HR MLE NH E ++ N ELI F V+ +D
Sbjct: 314 IAKGSIGFTMVHRAMLEFINHADSNEAKELLN-LTKELIYEF-VHTRD 359
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 130 ESFKNFFVDFCQTDDE 177
+SF NF VD+C+ D+
Sbjct: 53 QSFANFLVDYCKNQDQ 68
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 169 DDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYE 348
D E KK + + +E+ E + LH++NE + +K+ R ++ D YE
Sbjct: 125 DGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERINDLTYD--YE 182
Query: 349 ML 354
L
Sbjct: 183 TL 184
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +1
Query: 295 VKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEAR 435
++ N ++ +SD E+LPDY+ + V ++ + E ++L+ R
Sbjct: 998 LESNIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERTVLLKGR 1044
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Frame = -2
Query: 435 SGFQHNSVLNVYIQGILCY-NLFEFV-----IRQHFINHV*HHISVSSGILF 298
SGF + SVL V++ G C+ N F + Q F+N +SS +L+
Sbjct: 201 SGFGYLSVLPVFVFGFTCHQNAFSVINEVRNFSQGFVNFTMFTAIISSTLLY 252
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/35 (22%), Positives = 20/35 (57%)
Frame = +2
Query: 392 PWMYTLSTELCWKPETTGFLEK*GILGTDTHQSLS 496
PW + L ++ WK T ++ ++G D +++++
Sbjct: 831 PWQHLLPPDVLWKYLETALVDISSLVGIDINEAVT 865
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 512 TSKTCQHRKVYLSEKLRLNI 571
TS+T Q+ + YL+EK +LN+
Sbjct: 612 TSQTVQNLQEYLNEKRKLNV 631
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +1
Query: 211 TKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKD 390
TK +E+ V+ + ++E+N L E VKQ T ++D ++ + +++++V K
Sbjct: 251 TKQLEKEEKRSRVNRNRINELNNSLGEIVKQQD-TLTTYLND-YFDSVFVHRYRDVEPKI 308
Query: 391 SLD 399
+D
Sbjct: 309 RVD 311
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 154 DFCQTDDEGKKYFKYAEQLTKVAHR---EQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTN 324
D QT D+ + ++ EQ+ ++ +R EQ+A DL ++ + E + ++ +R
Sbjct: 136 DSAQTLDDNRALQEFDEQVVQLTNRMYKEQLAILADLKIPLFLSVNNDEELSEDQKRLLQ 195
Query: 325 MVSDVV 342
++ D++
Sbjct: 196 LLQDLL 201
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = -2
Query: 390 ILCYNLFEFVIRQ 352
I CYN++EFV+++
Sbjct: 1833 IFCYNVYEFVVKE 1845
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 247 VDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPD--YKFKEVVAKDSLDVYIE-HR 417
V DD+ E E L + +++ + + ++ + LP+ +++++ + K LD+Y + H
Sbjct: 684 VKFDDMEETLEVLLDYIRKCSTSKEARIVYIILQNLPNISFRYQKKICKLLLDIYPQLHS 743
Query: 418 IMLEA 432
I +A
Sbjct: 744 IDYQA 748
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 605 VTIPRTVXSFPICSALTSLIGTLFDVDKSLKYT 507
V IP+ S+ + + L +IG LF V ++ T
Sbjct: 79 VHIPKVSSSYSVINTLNGMIGNLFGVKQASTLT 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,670
Number of Sequences: 5004
Number of extensions: 54928
Number of successful extensions: 158
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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