Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G23
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0768 - 22988119-22988223,22988337-22988558,22988645-229888... 112 3e-25
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 46 3e-05
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 31 1.1
12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144 29 2.4
08_02_1247 + 25578291-25578305,25579084-25579197,25579497-255796... 29 4.3
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 29 4.3
12_01_1001 - 10145663-10147006 28 5.6
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 28 5.6
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897... 28 7.5
01_06_1346 - 36478844-36479266,36479369-36479728,36479820-364801... 28 7.5
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 27 9.9
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 27 9.9
>12_02_0768 -
22988119-22988223,22988337-22988558,22988645-22988810,
22989176-22989181,22989281-22989453,22989737-22989928,
22990034-22990211,22990302-22990444,22990666-22990755,
22990869-22990991,22991391-22991568,22992213-22992442,
22992557-22992616,22992731-22992798,22992908-22992953
Length = 659
Score = 112 bits (269), Expect = 3e-25
Identities = 67/184 (36%), Positives = 104/184 (56%), Gaps = 3/184 (1%)
Frame = +1
Query: 112 DYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLH---EMNED 282
D+ A++ K+F +F E K Y L VA+R+ A +++LDDL + +++
Sbjct: 10 DFAAERALAKDFLANFAGPRGEPK----YLNILQDVANRKIRAVQIELDDLFHYKDADDE 65
Query: 283 LTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMR 462
+ V +NT+RY + +D + E++P+ V +D D+ + R+ E + G
Sbjct: 66 FLQRVTENTKRYIGIFADAIDELMPESTEAYAVDEDR-DILMTQRVD-EGADGGADGT-- 121
Query: 463 DPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLXTVRGIVTRCTDVKPLLVVA 642
DP R PPE+ R FEVY K S + IR+VKA +IG+L + GIVTRC+DVKPL+ VA
Sbjct: 122 DPLQRMPPEIRRFFEVYIKAFSKVTPLTIRQVKASNIGQLVKISGIVTRCSDVKPLMQVA 181
Query: 643 TYSC 654
Y+C
Sbjct: 182 VYTC 185
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 46.0 bits (104), Expect = 3e-05
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +1
Query: 286 TEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRD 465
TE +R T M D + M +F +V+ K + Y+ L R E R
Sbjct: 39 TELEAMRSRESTTMYVDFAHVM----RFNDVLQKAISEEYLRFEPYLRNACKRFVMEQRT 94
Query: 466 PRNRYPPELIRRFEVYFKDLSTS-KSVP----IREVKAEHIGKLXTVRGIVTRCTDVKPL 630
NR P I + KD++ + ++P +RE+ IGKL V G+VTR ++V+P
Sbjct: 95 GENRAP---IISDDSPNKDINIAFYNIPMLKRLRELGTAEIGKLTAVMGVVTRTSEVRPE 151
Query: 631 LVVATYSC 654
L+ T+ C
Sbjct: 152 LLQGTFKC 159
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 479 THQSLSGDLKCTSKTCQHRKVYLSEKLRL 565
TH LS D+ S C+H K YL KL+L
Sbjct: 21 THLGLSSDIISKSFHCKHGKAYLFNKLKL 49
>12_01_0997 - 10114571-10114864,10115422-10115795,10115910-10116144
Length = 300
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 569 CSALTSLIGTLFDVDKSLKYTSNLLISSGGYLFLGSLISPGILWFLAS-NIILCSMYT 399
C+ L L L K + T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 21 CNILPRLPFKLTTRLKVISSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 78
>08_02_1247 +
25578291-25578305,25579084-25579197,25579497-25579628,
25579726-25579854,25580024-25580421,25580503-25580602,
25580734-25580793,25580881-25580967,25581058-25581186,
25581260-25581559
Length = 487
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +1
Query: 211 TKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEM 351
TK+AH EQ+ F +++ + M+ + +++ + T+M+ Y +
Sbjct: 275 TKMAHEEQLCFWINIHNALVMHAFMAYGLQEKRMKNTDMILKAAYNV 321
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 196 YAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKE 375
Y+ T A EQ+ D LH M D+TE +DV+ E++ +
Sbjct: 1066 YSRGNTNPAAVEQMVLRDIRDLLHSMGNDITEYGLLEISDIGERTNDVMTEIIEE--LNV 1123
Query: 376 VVAKDSLDVY 405
+V +D LD+Y
Sbjct: 1124 LVDQDHLDIY 1133
>12_01_1001 - 10145663-10147006
Length = 447
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 518 LKYTSNLLISSGGYLFLGSLISPGILWFLAS-NIILCSMYT 399
L T +++ G+ FLG + GIL LAS N ++C +YT
Sbjct: 89 LSSTPDIVGIPSGFDFLGCCLENGILSLLASTNGLVCILYT 129
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 146 FSWIFVKLMMKEKSILNMLNNLLKLHTENR*HLKLTWMI-YMR*MKI*LRQSNKIPEDTL 322
F W FVKL E+++ ML +L + + +T+ Y+ ++ ++ N++PE+
Sbjct: 215 FHWPFVKLPKLEQNLPPMLQQILSGERQMKRKFDVTFFCDYINLLRNSYKKFNELPENVK 274
Query: 323 IWC--QTWFMK 349
C Q F+K
Sbjct: 275 ALCINQDGFIK 285
>03_05_0172 -
21488504-21488752,21488862-21489611,21489691-21489789,
21489862-21490776,21490847-21490976,21491438-21491583,
21491801-21491896,21492521-21492613,21492702-21492755,
21492897-21492956,21493046-21493171,21493283-21493366,
21493444-21493587,21493667-21493963
Length = 1080
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 383 QRIPWMYTLSTELCWKPETTGFLEK*GILGTDTHQSLSGDLKCTSK 520
+R WM + S +C E LE +L T LS + KCT++
Sbjct: 833 EREKWMESESKWICLTEELRVDLESNRMLAEKTEMELSNEKKCTAE 878
>01_06_1346 -
36478844-36479266,36479369-36479728,36479820-36480110,
36480193-36480267,36482292-36482446,36482549-36482665,
36482757-36482976
Length = 546
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 519 FEVHFKSPDKLWWVSVPRIP 460
F F D+ WW+ VPR+P
Sbjct: 218 FRAAFHRRDEKWWLPVPRVP 237
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 62 EDSNYSNNIFLTKWQCVITLQIKNLS 139
E+ SNN+ +WQCV L + +LS
Sbjct: 174 EELRSSNNVIDMRWQCVEQLDVGDLS 199
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 519 FEVHFKSPDKLWWVSVPRIP 460
F + F D+ WW+ VPR+P
Sbjct: 249 FMLTFHRRDEKWWLPVPRVP 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,687
Number of Sequences: 37544
Number of extensions: 313555
Number of successful extensions: 805
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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