Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G23
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6324| Best HMM Match : MCM (HMM E-Value=0)                         149   3e-36
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)                34   0.088
SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         30   1.4  
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               30   1.9  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        30   1.9  
SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)                     29   2.5  
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)                   28   7.6  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   7.6  

>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score =  149 bits (360), Expect = 3e-36
 Identities = 75/146 (51%), Positives = 99/146 (67%), Gaps = 3/146 (2%)
 Frame = +1

Query: 139 KNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRY 318
           K F  +F    DEGK+ FKY EQL K+AHREQ    ++LDD+ E+++DL E VK+NTRRY
Sbjct: 560 KRFLAEFYVQGDEGKE-FKYGEQLIKIAHREQQELLIELDDIAEIDQDLAENVKENTRRY 618

Query: 319 TNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHR-IPGEMRDPRNRYPPELI 495
             +  D +YEMLP+YK +EV  KD+LD+YIEHR++LE RN +  PG   DPR +YPPEL+
Sbjct: 619 KRLFEDAIYEMLPEYKEREVQTKDALDIYIEHRLLLEQRNRQNEPGGAIDPRTKYPPELL 678

Query: 496 RRFEVYFKDLST--SKSVPIREVKAE 567
           RR       L T  SK V  +E+K +
Sbjct: 679 RRLAGGRLYLQTRGSKFVKFQELKIQ 704


>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 27/125 (21%), Positives = 58/125 (46%)
 Frame = +1

Query: 124 DKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQ 303
           ++ S K  F +F +   EG   F Y +QL +  +  Q   EVDL+DL   +E+L + +++
Sbjct: 27  NRVSAKKRFKEFLREFHEGTFAFPYRDQLKQHYNLGQYYLEVDLEDLSSFDENLADKLRK 86

Query: 304 NTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYP 483
           N   Y  +      E+  +      + ++ +       + +  R+   P ++R+ R+ + 
Sbjct: 87  NPSEYLPLFETAAKEVADEVTRPRPIGEEEV-----QDVQITLRSGANPFQIRELRSEHM 141

Query: 484 PELIR 498
             L++
Sbjct: 142 AALVK 146


>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
          Length = 652

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 547 IREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
           IRE+ ++ IG L  + G V R   V P LV AT++C
Sbjct: 509 IRELTSQKIGSLLRISGQVVRTHPVHPELVTATFTC 544


>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 112 DYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTE 291
           D T     F+   ++   T+ E  K   YA +  K AH++     +D+DD+H+M +D+ E
Sbjct: 79  DGTLSTIEFQREALEGANTNTEVLKNMSYAAKALKAAHQQ-----LDVDDVHDMMDDIQE 133


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +1

Query: 457 MRDPRNRYPPELIRRFEVYFKDLSTSKSVPIREVKAEHIGKLXTVR---GIVTRCTDVKP 627
           +R P  R PP  +  F   F+DL  S++  IRE  + +   +  VR   G +  C D + 
Sbjct: 399 VRQPHRRVPPGQLEEFRSAFEDLLESRT--IRESNSPYASPVVLVRKKDGALRVCVDFRQ 456

Query: 628 L 630
           L
Sbjct: 457 L 457


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 547 IREVKAEHIGKLXTVRGIVTRCTDVKPLLVVATYSC 654
           +R ++  H+ +L    G+VT  T + P L V  Y C
Sbjct: 216 LRSLRQLHVNQLIRTGGVVTSSTGIMPQLSVIKYDC 251


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 250 DLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLE 429
           DL D H +NE+L++ + Q TRR       V  E+       E + K   ++ + H    +
Sbjct: 32  DLRDAHALNENLSQQL-QETRRSAEEAGHVNKELRQAKLMNEQLGKQLAEL-LNHLSKFK 89

Query: 430 ARNHRIPGEM 459
             N R+  E+
Sbjct: 90  VENERLRSEL 99


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 250  DLDDLHEMNEDLTEAVKQNTRRYTNMVSDVVYEMLPDYKFKEVVAKDSLDVYIEHRIMLE 429
            DL D H +NE+L++ + Q TRR       V  E+       E + K   ++ + H    +
Sbjct: 1252 DLRDAHALNENLSQQL-QETRRSAEEAGHVNKELRQAKLMNEQLGKQLAEL-LNHLSKFK 1309

Query: 430  ARNHRIPGEM 459
              N R+  E+
Sbjct: 1310 VENERLRSEL 1319


>SB_11005| Best HMM Match : SspH (HMM E-Value=0.85)
          Length = 105

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 193 KYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRR 315
           K  E++   + R QI     +D++HE+ E+L EA+++N ++
Sbjct: 19  KQKEEICSSSERAQIT----VDEIHEVAENLVEAIRENKQK 55


>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 172 DEGKKYFKYA---EQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQN 306
           D+ ++Y KY    E+L     REQ +F+  ++DL    ++  EAV+++
Sbjct: 256 DQEQRYLKYMSNLEELQNEEKREQESFKSQIEDLKTRCQEKQEAVEKS 303


>SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 442 RIPGE-MRDPRNRYPPELIRRFEVYFKDL 525
           R+ G  + DP N+  P+  R+F  YFK L
Sbjct: 107 RVEGRILEDPSNKSEPQRKRKFSTYFKSL 135


>SB_2574| Best HMM Match : DUF217 (HMM E-Value=0.066)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 169 DDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAVKQNTRRYTN----MVSD 336
           D +G  YF  ++Q  +       +  V +D+L + NED+   +K       N     +S 
Sbjct: 67  DRQGGSYFSDSDQDDQYLPDRLSSLSVQVDNLKKENEDVRAQLKSRVNGDVNHNDSTISL 126

Query: 337 VVYEMLPDYKFKEV 378
            VYE L +   +E+
Sbjct: 127 SVYEQLKESSEEEI 140


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +1

Query: 91  SNKMAMRDYTADKESFKNFFVDFCQTDDEGKKYFKYAEQLTKVAHREQIAFEVDLDDLHE 270
           S K A ++  +D+E  +    +  +  +EG +  +  ++L K   RE+     DLD  H 
Sbjct: 115 SEKSAKQEKESDEEIARRLQAEIERLREEGSRLLQEQQELLKAQIREEEQKTDDLDQQHL 174

Query: 271 MNE----DLTEAVKQNTRRYTNMV 330
             +    D+T  +  +TR+ + +V
Sbjct: 175 TPKLKYGDVTHLLISSTRKGSAIV 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,156,585
Number of Sequences: 59808
Number of extensions: 381873
Number of successful extensions: 908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)