Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G23
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 327 HISVSSGILFDCLSQI 280
           H+SVS G L DC +++
Sbjct: 306 HLSVSGGALNDCHAEV 321


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 181 KKYFKYAEQLTKVAHREQIAFEVDLDDLHEMNEDLTEAV-KQNTRRYTNMVS 333
           ++ F Y     ++  +EQ+       + HE  + L  AV +      TN++S
Sbjct: 460 QQQFPYVHDTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILS 511


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 128 KNLSRTFSWIFVKLMMKEKSILNMLNNLLKLHT 226
           K ++  F  +   +  K  SILN  NN+ +L T
Sbjct: 241 KKITHFFDLVRPLIAFKFHSILNRTNNIFELVT 273


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 376 VVAKDSLDVYIEHRIMLEARNHRIPGEMRDPRNRYPPELIRRFEVYFKDLST 531
           ++AK  L  +I + + +      I    R PR    P+LIR+  ++ K L T
Sbjct: 295 LIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPQLIRK--IFLKYLPT 344


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 379 VAKDSLDVYIEHRIMLEARNH 441
           +  D+ +VY++  ++ E +NH
Sbjct: 792 IPMDATEVYLDGNVLRELQNH 812


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 QCVITLQIKNLSRTFSWI 157
           +CV+   +K+L R  SW+
Sbjct: 151 RCVVPSFVKDLVRVVSWL 168


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 104 QCVITLQIKNLSRTFSWI 157
           +CV+   +K+L R  SW+
Sbjct: 151 RCVVPSFVKDLVRVVSWL 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,045
Number of Sequences: 438
Number of extensions: 4149
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)