Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G21
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = +1

Query: 307 IVEEDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXX--IQEIDT 480
           ++ +D  + +  +   F  YD+  NG +    L +                   I   DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 481 DGSGTVDFDEF 513
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 353 RSDCTTRKATVTFPRRACARSSGNWT 430
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 336 ERTQGSVQIVRQGRQRLHSHVEPARDPPGIGRAAD 440
           ER Q S +  R+ R+   +  E +RD  G GR+ +
Sbjct: 292 EREQKSYKNEREYREYRETSRERSRDRRGRGRSRE 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,964
Number of Sequences: 438
Number of extensions: 2204
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)