Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G19
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        26   0.31 
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    24   0.93 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.2  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   2.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   2.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 326 SSTTSVRDLYPSISVAGFLGKINALLSCL 240
           +S+T     +PSI V G+ G+   ++SC+
Sbjct: 93  ASSTPENKTFPSIQVMGYQGRAVVVVSCV 121


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 40  RMYSIAFVLFFVGACYCDVDFS 105
           RM+ I  ++ FVG C   ++FS
Sbjct: 3   RMFLIVVLIAFVGVCTAQLNFS 24


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 232 YRTLLKRFPSSKSISQTARSQRAHQ 158
           YRT+ KR  S     +T  S R HQ
Sbjct: 162 YRTIKKRLRSCDLCQKTKSSNRPHQ 186


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 361 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANT 489
           NF+     F+L PA      +DF AS+    F      R  NT
Sbjct: 307 NFLKRHTGFSLRPAAGLLTARDFLASLAFRIFQSTQYVRHKNT 349


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = -1

Query: 306 GFVPFDQRCR---IFGQNKRSAQLPVAI 232
           GFVP +QRC    +F + K     P  +
Sbjct: 446 GFVPLEQRCNAGLVFDEEKLWCDYPEVV 473


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 216 SDSRHQSPYPKRRDHNVPISLSL 148
           SD+R   PYP+   ++   SLSL
Sbjct: 30  SDTRPMLPYPQNYINSYLFSLSL 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,113
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)