Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G19
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 55 6e-08
01_01_1152 + 9170628-9171899 51 9e-07
11_01_0767 + 6438648-6438809,6439146-6440000 45 6e-05
11_01_0771 + 6453130-6454488 44 1e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 32 0.45
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.0
03_05_0294 + 22855503-22855946,22856346-22856399 30 1.8
08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099 29 2.4
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 3.2
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 29 4.2
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 29 4.2
05_06_0044 - 25150322-25151260 28 5.5
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 28 7.3
06_03_0682 + 23487507-23487686 28 7.3
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 28 7.3
09_02_0379 - 8210401-8210567,8210944-8213827 27 9.7
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 54.8 bits (126), Expect = 6e-08
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Frame = +1
Query: 172 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 351
+ SP G+ + +A G G + RQL AF+ ++ I + + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQLL-AFLGSQH----IHQLNAASAGLLAEMRAWPQL 77
Query: 352 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYIEKS-GGRVSN 522
+F+D L P F++T GA + +DF + +A A N +I ++ GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 523 VLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELXPFYNE 645
+ F S + +L N + FK WG F DT+ F+ +
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQ 179
>01_01_1152 + 9170628-9171899
Length = 423
Score = 50.8 bits (116), Expect = 9e-07
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Frame = +1
Query: 172 VISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSL 351
++SP + +A GA G + R+L P +L E ++S T ++ + + +
Sbjct: 62 IVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRHLPNT 117
Query: 352 VSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSN 522
V++D L P F + A + DF+ P AR N ++ + + G + +
Sbjct: 118 SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRD 177
Query: 523 VLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELXPFY 639
VL + S ++ L N + FKG W LPF+ S T PF+
Sbjct: 178 VLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFH 217
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 44.8 bits (101), Expect = 6e-05
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Frame = +1
Query: 316 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSARIA-N 486
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 487 TYIEKSGGR-VSNVLRSDDFQ-ESRLILTNVISFKGLWGLPFNKSDT 621
++ ++ ++ V++ + ++R ++ N I FKG W PF+KSDT
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDT 110
>11_01_0771 + 6453130-6454488
Length = 452
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 547 ESRLILTNVISFKGLWGLPFNKSDTELXPFY 639
E+ ++L N I FKG W PFN+SDTE PFY
Sbjct: 201 ETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 484 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTELXPFY 639
N+++EK + G + +L + RL+L N + FKG W F+ S T+ F+
Sbjct: 218 NSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFH 271
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 216 SDSRHQSPYPKRRDHNVPISLSL 148
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>03_05_0294 + 22855503-22855946,22856346-22856399
Length = 165
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Frame = +1
Query: 166 HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILP-KNPATLIEGY-KSLTDVVLDQT-- 333
+V SP + ++ +A GA G + QL +P + A + + + + +VL +
Sbjct: 45 NVAFSPLSLHVALSLVAAGAGGATRDQLVSLLGVPGRGTAEGLHAFAEQVVQLVLADSSP 104
Query: 334 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF 456
A G + + VF+D+ +L+ +F+ + A +DF
Sbjct: 105 AGGPRVAFADGVFIDSSLSLMKSFKDVAVGKYKAETHSVDF 145
>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
Length = 453
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 417 ERRPEGRQQGEIVVQEDKVPTDQGYSVRGLIEHHVRQGFVPFDQRCRIF-GQNKRSAQLP 241
ER PEG G +VV ED+ +Q ++ + H R +PF Q R++ G++ +P
Sbjct: 19 ERPPEGPGSGFLVV-EDEAAVEQAATICCGLCHDPRVRTLPFTQSWRLYMGEDNVVVFVP 77
Query: 240 V 238
V
Sbjct: 78 V 78
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 443 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 288
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 484 NTYIEK-SGGRVSNVLRSDDFQES-RLILTNVISFKGLWGLPFNKSDTE 624
N+++++ + G + +L + RL+L N + FKG W F+ S T+
Sbjct: 10 NSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTK 58
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 315 VRQGFVPFDQRCRIFGQNKRSAQLPVAITGRS*SDSR 205
+RQG +PF Q F K S +P A+T + ++ R
Sbjct: 878 IRQGILPFAQLSLSFNDIKYSVDMPEAMTAQGVTEER 914
>05_06_0044 - 25150322-25151260
Length = 312
Score = 28.3 bits (60), Expect = 5.5
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Frame = +1
Query: 367 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIANTYIEKSGGRVSNVLRS--DD 540
V++D L PAF T F A+++ A I + ++GG V ++L + DD
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRSAGNPAAARAEINEWFSSQTGGFVKDILSNSIDD 62
Query: 541 FQE----------SRLILTNVISFKGLWGLPFNKSDTELXPFY 639
+ + + L N + F W PF TE F+
Sbjct: 63 DDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFH 105
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 419 WSVVLKAGNKVKSLSKKTKFRLTRD 345
W ++ GN+V S+ K KFR RD
Sbjct: 57 WIGIICTGNRVTSMLKTVKFRTVRD 81
>06_03_0682 + 23487507-23487686
Length = 59
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 223 ASGNSYRQLSRAFILPKN-PATLIEGYKSLTDVVLDQTANGVSLV 354
A+G L++ LP P+T IE YK +V L +GV+++
Sbjct: 13 AAGGMRHDLTQTVALPCAWPSTTIEAYKKTPNVELQDQVSGVNML 57
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -1
Query: 408 PEGRQQGEIVVQEDKVPTDQGYSV---RGLIEHHVRQG 304
PE R GE++ +DK P+ +G V + ++E HV +G
Sbjct: 223 PECRGSGEMISDKDKCPSCKGNKVVQQKKVLEVHVEKG 260
>09_02_0379 - 8210401-8210567,8210944-8213827
Length = 1016
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 271 WAK*TLCSAACSYYRTLLKRFPSSKSISQTARSQRAHQSE 152
WA T S C++ ++L PS +S Q H SE
Sbjct: 502 WASATRISLMCNFIKSLPSELPSCPKLSVLVLQQNFHFSE 541
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,071
Number of Sequences: 37544
Number of extensions: 368466
Number of successful extensions: 966
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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