Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G19
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      62   4e-10
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      50   1e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      31   0.61 
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         29   3.2  
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)                       29   3.2  
SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 28   5.7  
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)                     28   7.5  
SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18)                 28   7.5  
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)             27   9.9  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     27   9.9  
SB_46843| Best HMM Match : IQ (HMM E-Value=0.074)                      27   9.9  
SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)                    27   9.9  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 6/173 (3%)
 Frame = +1

Query: 136 LYHTQTQTDG--HVVISPFGIWTLMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSL 309
           L+   T  DG  ++  SP  I   +    LGA GN+  Q+++ F  P +   + E +   
Sbjct: 17  LHRVLTAQDGQTNLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTD---VPEKFHDF 73

Query: 310 TDVVLDQTANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF-SDPNSAR-IA 483
              +    ++G  ++  N +F    F +L  F+   ++ F A + ++D+  + N AR   
Sbjct: 74  LQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTV 133

Query: 484 NTYIE-KSGGRVSNVLRSDDFQESRLI-LTNVISFKGLWGLPFNKSDTELXPF 636
           N ++E K+  ++ N++    F +  ++ L N + FKG W   FN++ T+   F
Sbjct: 134 NRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
 Frame = +1

Query: 361 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF-SDPNSARI-ANTYIE-KSGGRVSNVLR 531
           N +FL  DF++L  F    QK + A I ++D+ +D   AR   N ++E ++  ++ +++ 
Sbjct: 54  NNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIA 113

Query: 532 SDDFQE-SRLILTNVISFKGLWGLPFNKSDTELXPF 636
              F   +RL L N I FKG+W  PF K  +    F
Sbjct: 114 PGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEF 149


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 19/97 (19%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = +1

Query: 361 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDP--NSARIANTYI-EKSGGRVSNVLR 531
           N ++  ++F +L  F    ++ + + +  +DF +   ++ +  N ++ +++ G +  ++ 
Sbjct: 59  NKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIP 118

Query: 532 SDDFQE-SRLILTNVISFKGLWGLPFNKSDTELXPFY 639
                  +RLI+ N + FKG+W   F + +T    F+
Sbjct: 119 HGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFF 155


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 297  PFDQRCRIFGQNKRSAQLPVAITGRS*SDSRHQSPYPKRRDHNVPIS 157
            P   + R FG NK   QL  + TG S   ++   P P RR+H +P++
Sbjct: 1426 PSPSKERAFGVNK---QLYTSPTGESLGVNKQLHPSPHRREHFMPVN 1469


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 450 EHFNRSTEILLERRPEGRQQGEIVVQEDKVPTDQGYSVRGLIEHHVRQG 304
           E+FN      L  + E  Q GEI+V+   +P  Q Y    L+   VR G
Sbjct: 192 EYFNVMLGTQLLYKFERPQYGEILVENSNLPMSQVYGAEHLLRLFVRLG 240


>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
          Length = 1039

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 132 FNAKIPWSLAEIDITITRADEKKN 61
           FN ++PWS     IT+TR D K +
Sbjct: 15  FNERVPWSSYCFPITVTRKDRKND 38


>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 199  LMTGIALGASGNSYRQLSRAFILPKNPATLIEGYKSLTDVVLDQTANGVSLVSRNFVFLD 378
            ++TG+  G      + +   F   K+P+     Y  +T  V  Q+    SL  +NF   D
Sbjct: 1423 VITGLVAGIGWVGRKVIREDFT--KDPSANAMNYAKMTAAVAAQSCERGSLAKQNFT--D 1478

Query: 379  NDFTLLPAFRTTLQ 420
            ND+ L    +T+L+
Sbjct: 1479 NDYALKLYNQTSLE 1492


>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
          Length = 474

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = -2

Query: 617 SDLLNGNPQRPLKDITLVSINLDSWKSSERRTFE 516
           ++ ++ NP+ PL+D T+  ++L   + S+ RTF+
Sbjct: 166 NESVSPNPRSPLEDYTIHIVDLRKGRLSDSRTFK 199


>SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18)
          Length = 534

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 471 RIRVAEVEHFNRSTEILLERRPEGRQQGEIVVQEDKVPT 355
           RI   + +H +   E+L  +RP     G +  QE  VP+
Sbjct: 101 RISTEQGKHLDTPLEVLFHQRPGHHLTGHVFYQESPVPS 139


>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
 Frame = -1

Query: 627 QFGVRFVERQSPKAFEGYHVG*YQS*FLEVVRAQNVRDASPGFFDVGVGYSSRIRVAEVE 448
           Q+    V R+  KA  G+H     S  +   R    RD    F D+ V     + +A V 
Sbjct: 278 QYEHGMVLRELNKALVGFH-----SPEVGFNRMSRKRDTE--FVDITVTQEEPVAMATVP 330

Query: 447 HFNRSTEILLERRPEGRQQGEIVVQEDKVPTDQGYSVRGLIEHHVRQGFVPFDQRCRIFG 268
             +   +++ +R  +G    ++ +  D+   D G  +  LI+  V + F    ++ RI+ 
Sbjct: 331 GIHNLGQLIADRVLQGVWD-DMTLNGDRHTDDSGKLLTSLIKKSVEEVFKQTPEKVRIYT 389

Query: 267 QN-KRSAQLP 241
           ++   SA LP
Sbjct: 390 EHVTNSALLP 399


>SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +1

Query: 46  YSIAFVLFFVGACYC-DVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIW 195
           Y    VLFF       D  F E P +    + Y     TD HV + P  +W
Sbjct: 78  YYRLIVLFFAAINNSSDTSFLELPPSLPEPIAYFRLDGTDQHVTVLPLSMW 128


>SB_39494| Best HMM Match : Cm_res_leader (HMM E-Value=2.8)
          Length = 159

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 373 RRQSSD*PGILRSRSDRAPRPSGICTLRSALPDFW 269
           ++Q S  PG L +R  R PR   +C  RS   +++
Sbjct: 117 KQQDSGVPGTLSTRRRRTPRTLDLCARRSRRSNYY 151


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 248 SCL*LLPDAPKAI-PVIKVHIPNGEITTCPSV 156
           +C  L+P  P+A+ P   +H+PNG +    SV
Sbjct: 132 TCTALVPTPPQAVLPYHPLHVPNGNVPVNTSV 163


>SB_46843| Best HMM Match : IQ (HMM E-Value=0.074)
          Length = 260

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 233 LPDAPKAIPVIKVHIPNGEITTCP 162
           L D  KA+ V  +  PNG+I +CP
Sbjct: 30  LEDTEKAVKVETISGPNGDIPSCP 53


>SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)
          Length = 399

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 250 SAACSYYRTLLKRFPSSKSIS 188
           SA   YY  LL+RFP+SK +S
Sbjct: 319 SAEIPYYIRLLERFPNSKKLS 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,126,735
Number of Sequences: 59808
Number of extensions: 420098
Number of successful extensions: 1154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)