Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G18
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   6.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   8.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   8.0  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 365 RHYGSSRSINGVFRYHKHRSP-SSSNPSLATKGSTSELTHRH 243
           R+YG +    G   Y+ + +P SSS PS+ ++ +T   T+ +
Sbjct: 58  RYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSY 99


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 392 GKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTSELTHR 246
           G   +S  +  + S     G+ +     SPS+S+PS A+  S S+   +
Sbjct: 35  GSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKYVRK 83


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 448 PWCSDGYPAKSGLNNLKGF 504
           P+C   YPA S LN+  G+
Sbjct: 356 PYCHTSYPAMSRLNSSSGY 374


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 452 HGFSGTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSINGVF 327
           + F   W+  M+WN S  P G+++    +  Y    S N  +
Sbjct: 370 NSFEQDWLASMSWNLSPGPRGQKAWEWWSASYSLFTSSNATY 411


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/85 (25%), Positives = 35/85 (41%)
 Frame = +2

Query: 230 NSVGCVYGLIRSSSPSLQATGSTRTVTGACDT*KHR*WIGRIRNDVFWATSTVYHSVYRI 409
           N+V C++ + R +   +   G  RTV  +  T +H    G +  D   A   +   V  +
Sbjct: 591 NTVACIFSVDRDTYKVIDQNGGVRTVLASQITMRHSNRRG-VATDRNGAEIRIGDKVKEV 649

Query: 410 GSRSS*RSTFLRNHGAPTAILQNRD 484
           G     + T L  + A    L NRD
Sbjct: 650 GGEGK-QGTILHIYRA-FVFLHNRD 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,961
Number of Sequences: 5004
Number of extensions: 48001
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)