Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G18
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158     30   2.1  
08_02_1603 - 28156141-28157025,28157547-28157999                       29   3.6  
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062...    29   4.8  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           29   4.8  

>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
          Length = 974

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 594 VYNL*SAHHTPRRVMTYASVVFVHAAHTNLKPLQVIQSRFCRIAVGAPW 448
           +YNL  AH TP  VMT A  +F H     + P   + +R+    +   W
Sbjct: 81  LYNLQMAHLTPNAVMTLA--IFAHLCEMFIGPRGPVLNRYIPCVLRKKW 127


>08_02_1603 - 28156141-28157025,28157547-28157999
          Length = 445

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 443 SGTWIFMMTWNRSCRPNGKQSTSPKTRHYGSSRSI 339
           + TW FM +W   CR  G  S  P   + G +RS+
Sbjct: 173 TSTWHFMTSWAELCRGGGAPSLLP-VHNRGMARSV 206


>02_05_0530 -
           29804939-29805547,29805658-29805885,29805978-29806261,
           29807095-29807199,29807648-29808155
          Length = 577

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 318 VIPKNTVNGSGGSVMTCFGRRRLFTIRS 401
           ++P+    G GG++M   GR R + +RS
Sbjct: 120 IVPQEAAVGGGGAMMAVVGRSRQYVLRS 147


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 410 RSCRPNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTSE 258
           R  R + ++ TSP  +  GS RSI G   + +  S  S +P L +   +S+
Sbjct: 161 REARASSRRFTSPPPKRRGSERSIYGK-SFDRQLSDMSQSPDLCSTPVSSD 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,046,032
Number of Sequences: 37544
Number of extensions: 352349
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)