Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G18
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55690| Best HMM Match : AAA (HMM E-Value=0)                         30   1.6  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               30   2.1  
SB_42717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_52755| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)                 28   8.5  

>SB_55690| Best HMM Match : AAA (HMM E-Value=0)
          Length = 1031

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 543 ASVVFVHAAHTNLKPLQVIQSRFCRIAVGAPWFLRNVDLHDDLEPIL 403
           A VV V+  H   K ++ +Q    +    A W+ ++V L DDL+ ++
Sbjct: 454 AHVVVVNCIHLRAKRVEAVQKHLQQAFTEAAWYQQSVLLLDDLDHVV 500


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 401 RPNGKQSTSPKTRHYGSSRSINGVFRYHKHRSPSSSNPSLATKGSTS 261
           RP G    S K+   GS  S +      KH SPS S+  + TKG+T+
Sbjct: 478 RPQGNLLESLKSSE-GSMESTSNDSPLRKHSSPSLSDAIMRTKGTTN 523


>SB_42717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 526 NEHYACIRHDATGRMVCRS*IIHLI 600
           +++Y C   D T R +C S I+HL+
Sbjct: 98  HDNYVCTAMDLTSRFLCLSTILHLL 122


>SB_52755| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-16)
          Length = 366

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 526 NEHYACIRHDATGRMVCRS*IIHLI 600
           +++Y C   D T R +C S I+HL+
Sbjct: 98  HDNYVCTAMDLTSRFLCLSTILHLL 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,332,201
Number of Sequences: 59808
Number of extensions: 397268
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)