Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G18
         (704 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    26   1.0  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    25   3.1  

>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 335 GVFRYHKHRSPSSSNPSLATKGSTSELTHRH 243
           G    H H SP   +P + +  + + LTH H
Sbjct: 468 GFSSLHSHHSPHHVSPGMGSTVNGASLTHSH 498


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
 Frame = -1

Query: 407 SCRPNGKQSTSPKTRHYGSSRSIN-GVF-------------RYHKHRSPSSSNPSLATKG 270
           SC PN  Q+T+      GS  S N G F              +  H SP S NP LA  G
Sbjct: 19  SCYPNNSQNTNSSPNTAGSQGSQNDGYFPPSTYAPNIYPGTPHQAHYSPQSYNP-LAGAG 77

Query: 269 STS 261
           +TS
Sbjct: 78  ATS 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,014
Number of Sequences: 2352
Number of extensions: 12389
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)