Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G17
         (358 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein.     29   1.3  
AE013599-3889|AAF47218.2| 1556|Drosophila melanogaster CG13582-P...    27   5.3  
AE014296-1383|AAF50477.1| 1579|Drosophila melanogaster CG7487-PA...    27   9.3  

>AF233659-1|AAF42939.1| 1530|Drosophila melanogaster RECQ4 protein.
          Length = 1530

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 88  SRREGQEASEDEQFEHFVDCQWTSSELN 5
           S  + QE+SEDE+ +   D  W+S E++
Sbjct: 704 SEEDDQESSEDEEVQQHPDPNWSSDEMD 731


>AE013599-3889|AAF47218.2| 1556|Drosophila melanogaster CG13582-PA
           protein.
          Length = 1556

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 262 FMRNYVSTLSAEINKPIYLLPE 327
           F+RNYVST++A +    +L+PE
Sbjct: 210 FLRNYVSTINATLKVCWHLVPE 231


>AE014296-1383|AAF50477.1| 1579|Drosophila melanogaster CG7487-PA
           protein.
          Length = 1579

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 88  SRREGQEASEDEQFEHFVDCQWTSSELN 5
           S  + QE+S DE+ +   D  W+S E++
Sbjct: 753 SEEDDQESSGDEEVQQHPDPNWSSDEMD 780


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,617,549
Number of Sequences: 53049
Number of extensions: 72068
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 880179048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)