Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G16
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                     122   3e-28
SB_56173| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)                     33   0.35 

>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score =  122 bits (295), Expect = 3e-28
 Identities = 70/209 (33%), Positives = 117/209 (55%)
 Frame = +2

Query: 170 FKALKAVXIPGLMXXXXXXXXXXXXXLVRMALISPLXITXYCAEAKXXILTLLSGIDLVN 349
           F+A+++  +  L              LVRMAL SP+  +    EA+  +  +LSG+++VN
Sbjct: 13  FRAIRSASVTELSKLDNASLRPLLPCLVRMALCSPVDQSVSWTEARKEVQKILSGLEIVN 72

Query: 350 FIVSLLSIEFHVLEADVKKEQQMRQKSGSQCIESTLIPNIINGIASDFEQXXXXXXXXXX 529
            IV+LLS++F  LE D  KE Q+R+K G     S L+ ++ N +A +FE+          
Sbjct: 73  SIVALLSVDFSFLEQDALKELQLRKKVGGGAGASVLVESLQNELALEFERSEPSRRLRLI 132

Query: 530 XXXXXQMQAQLVEFNQTKNTNADYTIKPSELFDNDVYLEEITDVICISLAEIPNLLNICD 709
                ++ ++L        +  ++  + SELF+ ++YLEE++DV+CI+ AE+P+LL +  
Sbjct: 133 LSELLRIMSKL-------PSTEEFLPEKSELFECEIYLEEVSDVLCIAQAELPSLLPLEQ 185

Query: 710 VVEVLLYVNKGPSIISWVVANQPDMXQEV 796
           V E LL V  GP ++  +VAN PD  ++V
Sbjct: 186 VAEALLRVKYGPWLLCRLVANVPDNFEQV 214


>SB_56173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/52 (36%), Positives = 29/52 (55%)
 Frame = -2

Query: 555 ACICNSSDRTRRTLLEESDCSKSLAIPLIIFGISVDSMHCDPLFCLICCSFF 400
           ACI  SS+R  RT+   +D S S+ I +++   +V    C PL C+   S+F
Sbjct: 5   ACILASSNRRNRTMALNNDFSLSVLIAIMLGAFTVT---CLPLHCVNYLSYF 53


>SB_31227| Best HMM Match : RIO1 (HMM E-Value=0.13)
          Length = 633

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 474 LIIFGISVDSMHCDPLFCLICC 409
           ++++G+  D M+CD LF L+CC
Sbjct: 313 IMVYGLDKDKMNCDRLFNLLCC 334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,278,518
Number of Sequences: 59808
Number of extensions: 328150
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)