Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G16
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27010.1 68418.m03222 hypothetical protein                          29   2.7  
At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR...    29   4.7  
At5g06350.1 68418.m00711 expressed protein                             28   6.2  
At5g46040.1 68418.m05662 proton-dependent oligopeptide transport...    28   8.2  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    28   8.2  

>At5g27010.1 68418.m03222 hypothetical protein
          Length = 863

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 357 TMKFTKSMPESSVSIXXLASAQXLVIXNGDI 265
           T+ F    PESS+ +  ++  + L+I NGDI
Sbjct: 439 TITFNNCKPESSLKLACISVVKDLIIPNGDI 469


>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 584 NTNADYTIKPSELFDNDVYLEEITDVICISLAEIPNLLNICDVVEVL 724
           N N  Y +K          LE +T   C+SL E+P+ ++    +E+L
Sbjct: 618 NLNRSYRLKEIPNLSKATNLERLTLESCLSLVELPSSISNLHKLEIL 664


>At5g06350.1 68418.m00711 expressed protein
          Length = 890

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 357 TMKFTKSMPESSVSIXXLASAQXLVIXNGDI 265
           T+ F+   PES + +  +++ + ++I NGDI
Sbjct: 464 TITFSDCKPESKLKLACISTVRDMIIPNGDI 494


>At5g46040.1 68418.m05662 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 586

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 335 IDLVNFIVSLLSIEFHVLEADVKKEQQMRQK 427
           ++L+NFI+ L+ I F+   ADV +   + QK
Sbjct: 546 LNLLNFILFLVVIRFYEYRADVTQSANVEQK 576


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 596 DYTIKPSELFDNDVYLEEITD 658
           DYT +P+++ D+DV +EE+ +
Sbjct: 821 DYTPEPTQILDHDVTIEEVEE 841


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,134,646
Number of Sequences: 28952
Number of extensions: 217964
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)