Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G15
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 36 0.007
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|... 33 0.050
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 32 0.066
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 27 1.9
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 3.3
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.3
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 26 5.7
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 26 5.7
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros... 25 7.6
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 25 7.6
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 25 7.6
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 10.0
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 10.0
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom... 25 10.0
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 217 GGMVFNSQNQILVVVEQHTDIVHWKLPGGYVERGEDIKDAVIREVMEETGIEAS 378
G ++ + Q V+V+ W P G +++ E D IREV EETG + S
Sbjct: 100 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS 153
>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 32.7 bits (71), Expect = 0.050
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 301 GYVERGEDIKDAVIREVMEETGIE 372
G++E GE +++AV+RE EE+G++
Sbjct: 259 GFLEPGESLEEAVVRETYEESGVD 282
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 32.3 bits (70), Expect = 0.066
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +1
Query: 289 KLPGGYVERGEDIKDAVIREVMEETGIEASFDSIVTLRHSHNSMFGNSDIYIVV 450
++P G V+ E +DA IRE+ EETG + T+ ++ + N+++ I++
Sbjct: 86 EIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGL-TNANLKIIL 138
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 94 YLPRLDLISITPGXSFVMMYKWLPTNSKANLP 189
+LP +D I G +FV++YK + ++ + LP
Sbjct: 182 FLPYVDAIGTPEGYAFVILYKKVDQSALSKLP 213
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 280 VHWKLPGGYVERGEDIKDAVIREVMEETGIE 372
V+ KLP ++ +G+ DA+ R +EE IE
Sbjct: 576 VYHKLPESFIGQGKFGADAIQRRAVEELNIE 606
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 292 LPGGYVERG-EDIKDAVIREVMEETGIEASFDSIVTLRHSHNS 417
L GG V +G +DI V+ E+TG+ DS TL + S
Sbjct: 426 LTGGSVSKGADDILQHVLHLKSEQTGVVVGPDSTPTLSFTSGS 468
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 184 LPPACHT-NLGVGGMVFNSQNQILVVVEQHTD--IVHWKLPGGYVERGEDIKDAVIREVM 354
+ PAC N+ +G + + +V E D ++ +K G + R ED+ VIR
Sbjct: 729 MKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVIRFKSGGMFSGRSEDVLVTVIRSNG 788
Query: 355 EE 360
EE
Sbjct: 789 EE 790
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 161 CLQTAKPICHQHAIQILV*EVWSLIAK 241
CL++ +P+C++H +I ++W L+ K
Sbjct: 427 CLESIEPLCNKHEKKIF--KLWLLVLK 451
>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
protein phosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 156
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 331 DAVIREVMEETGIEASFDSI 390
+AV R +E+ G+EA FD+I
Sbjct: 22 EAVFRNEVEKAGLEARFDTI 41
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 97 SMGTQSACFIFTLNHMQRLFCSDHFFK 17
S+G S C +F L+ + FC F+K
Sbjct: 78 SLGAMSLCDVFHLSFLYNPFCRYTFYK 104
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 342 YNSIFDVFTSFNITSW*F-PMNNIGML 265
YNS FD + +T W F P+ N L
Sbjct: 438 YNSSFDKIIGYKVTGWTFQPLENRAQL 464
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 406 SHNSMFGNSDIYIVVMLKAISDTINKSEIEIAACQ 510
S N + G +DI + IS INK+E + CQ
Sbjct: 164 SSNRIEGLADIEKAIRQIEISQNINKAERRVCNCQ 198
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 10.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 292 LPGGYVERGEDIKDAVIREVMEETGIEASFDSI 390
LPG E I++ ++RE E+TG S+
Sbjct: 103 LPGQKFFEFEKIREEIVRETEEKTGKNVGISSV 135
>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 69 IKHADWVPILAKAGFDFHHSRXQFCYDVQMVAYKQQSQFATS 194
+KHA+W +LAK D +C ++ +AY Q+ +S
Sbjct: 59 LKHANWALLLAKKKSD--TGLIGYCQSLRGLAYYLLEQYQSS 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,825
Number of Sequences: 5004
Number of extensions: 54350
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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