Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G14
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05) 32 0.53
SB_38517| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.53
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85) 31 0.71
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 30 1.6
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 30 2.2
SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 29 2.8
SB_22314| Best HMM Match : DUF1220 (HMM E-Value=2.4) 29 2.8
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 29 3.8
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 29 5.0
SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 29 5.0
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 28 6.6
SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7) 28 6.6
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 8.7
SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_51172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 31.9 bits (69), Expect = 0.53
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Frame = +2
Query: 107 PYRQADGQQTPDNYTQPPTS--RANERRPIGLDRMVPGEPSNDQYQAGNYPQYQGTNYAV 280
PY Q QQ +Y P +A + P ++ P YQ PQYQ A
Sbjct: 101 PYHQNPYQQQSHSYPGQPGQPYQAQGQSPYQQNQPPYNAPPQQPYQGQRQPQYQPQGQAS 160
Query: 281 SEQRIVTGFDHDFQLRLDAGPSDIREQNVDGSDYSEQ 391
++Q G +Q PS ++Q + Y +Q
Sbjct: 161 NQQPPQQG-QRPYQPSYQGQPSQQQQQYQGQTPYQQQ 196
>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
Length = 485
Score = 31.9 bits (69), Expect = 0.53
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 122 DGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQ--YQAGNYPQYQGTNYAVSEQRI 295
+G ++PD +S +E+RP D+ VPG + + YQ P YQG + +
Sbjct: 176 EGDKSPDYKDSATSSFEDEQRPEYEDKQVPGYEVDHRSGYQDELKPGYQGEHRLSYQGSE 235
Query: 296 VTGFDHDFQ 322
+G HD Q
Sbjct: 236 TSGTYHDAQ 244
>SB_38517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 31.9 bits (69), Expect = 0.53
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Frame = +3
Query: 84 SRLTIAVALTDRQTVSKLLIITHS-------LLLAEQTKEDQLAWIEWFQASQATTSIKL 242
S+ + L R TV++LL++ + LLL ++TK+ +A + + ++ TT I+L
Sbjct: 147 SKFIARLLLVKRTTVARLLLVKRTKQTTVARLLLVKRTKQTTVARLLLVKRTKQTTVIRL 206
Query: 243 AIILNIREQTTQLANKGSSLASITI 317
+LN R+ T AN+ ++ T+
Sbjct: 207 --LLNRRQATLGQANQTNNRRQATL 229
>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
Length = 1459
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 326 RLDAGPSDIREQNVDGSDYSEQALRT 403
RL++GP D+ +VDG Y+EQ LRT
Sbjct: 1037 RLESGPKDVTADHVDG--YAEQGLRT 1060
>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
Length = 942
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +2
Query: 65 DRHGDGQPTDNSSRPYRQADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAG 244
++ G+ D+SSR + + Q+ + P+S ++RR +G DR+ G+ AG
Sbjct: 661 EKDGERAVIDSSSRFFDRQRRQRKFKAPGETPSSHFHDRR-VGRDRLATGDAEAHLPSAG 719
Query: 245 NYPQ 256
N P+
Sbjct: 720 NRPE 723
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 29.9 bits (64), Expect = 2.2
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Frame = +2
Query: 65 DRHGDGQPTDNSSRPY---RQADGQQTPDNYTQ----PPTSRANERRPIGL--DRMVPGE 217
+R +P+ S+ Y RQA G +TPD +T P + A + P L R P +
Sbjct: 406 ERPTTSRPSHTSATEYYPDRQAPGHRTPDRHTHNNHAPESYPAAQHTPEHLTNTRNTP-D 464
Query: 218 PSNDQYQAGNYPQYQGTNYAVSEQRIV---TGFDHDFQLRLDAGPSDIREQNVDGSDYSE 388
++ G PQY T + + +V + + R +A +++R D ++
Sbjct: 465 HTHVGDSEGTSPQYTLTKVSPEMEALVRERNDLARELRQRTEAYEAELRRLRAQNDDLNQ 524
Query: 389 QALRTQ 406
Q + Q
Sbjct: 525 QVITLQ 530
>SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 29.5 bits (63), Expect = 2.8
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = +2
Query: 83 QPTDNSSRPYRQADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQ-----YQAGN 247
QPTD + + GQQ D Q P ++ ++P P +P+ Q Q N
Sbjct: 76 QPTDPTGQQPNDPTGQQPTDPTGQQP-NQPTGQQPTDTTDQQPNQPTGQQPTDTTDQQDN 134
Query: 248 YPQYQGTNYAVSEQRIVTGFDHDF 319
P+ Q N + +IV + F
Sbjct: 135 EPESQQPNNPTGQSQIVVSTAYAF 158
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 95 NSSRPYRQADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQGTNY 274
+S +P A + + PP SR P L R + +PS D +G+ Q +
Sbjct: 524 SSKKPSPLATKPPSSAGHVNPPPSRPQTHHPSRLPRKISRDPSTDSTLSGDQESDQDA-H 582
Query: 275 AVSEQRIVTGFDHDFQL-RLDAGPS 346
+S++ T D+ + R D+ P+
Sbjct: 583 RLSQEVYPTVSDNGMRFPRQDSYPT 607
>SB_22314| Best HMM Match : DUF1220 (HMM E-Value=2.4)
Length = 148
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 407 PRNVIGARESNDMPPDYGAPPEXQQREVTMEGENLQDLSVISSTEMTFSREQILDGADTT 586
P IGA ES + PPD PE + REVT G ++ ++++ ++ S + + D +++
Sbjct: 67 PVTYIGA-ESGEEPPDEDLEPENEYREVT-AGRDV----IVAAAKLDSSTDDLADSPESS 120
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 496 HSDFPLLXFRWSSVVRW 446
H D PLL +W++VVRW
Sbjct: 654 HRDLPLLFNQWNNVVRW 670
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 83 QPTDN-SSRPYRQADGQQT--PDNYTQPPTSRANERRPIGLDRMVPGEPSNDQ-YQAGNY 250
QPT+ +++P Q Q T P N T PT++ N+ + D+ +P+N Q A +
Sbjct: 235 QPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPT-NQPANLQTTHAPSQ 293
Query: 251 PQYQGTN 271
P Q TN
Sbjct: 294 PADQPTN 300
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/95 (26%), Positives = 41/95 (43%)
Frame = +2
Query: 425 ARESNDMPPDYGAPPEXQQREVTMEGENLQDLSVISSTEMTFSREQILDGADTTLTEAAL 604
+++ N + PP+ + V E + D V + ++T EQ D T+ A
Sbjct: 45 SKQRNSNEKETKVPPK--KMAVKFEDSDESDDDVPMADKLTEDMEQNTDDNSNTV---AK 99
Query: 605 DRNTDASDSINHPTTSSRGQSLTRVTSGEDSERDR 709
D + D + TSS+ +S T V DS+ DR
Sbjct: 100 DSSISDMDYLRTKVTSSKTESDTDVNKEFDSDDDR 134
>SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 101 SRPYRQADGQQTPDNYTQPPTSRANERRPIGLDRMVP-GEPSNDQYQAGNYPQYQGTNYA 277
S P ++D + + D YT+P T N RRP+ + P +N+ + P+
Sbjct: 30 SGPIEESDSEDS-DGYTEPRTPPFN-RRPLPVVPRSPIARVANNDQVSDERPRDDSVQRQ 87
Query: 278 VSEQRIVTGFDH 313
VSE+ G+D+
Sbjct: 88 VSERASEGGYDN 99
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +2
Query: 470 EXQQREVTMEGENLQDLSVISSTEMTFSREQILDGADTTLTEAALD 607
E QQRE+T ++L L I S +T Q+ +G +T +EAA+D
Sbjct: 445 EEQQREITELQKHLNKLRRILSKNLT--GIQLPNGGETAESEAAID 488
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 272 YAVSEQRIVTGFDHDFQLRLDAGPSDIREQN 364
Y V++ R+V GF++ Q++L SD R N
Sbjct: 10 YVVNQTRVVVGFEYRLQVKLMTQTSDWRINN 40
>SB_44805| Best HMM Match : Col_cuticle_N (HMM E-Value=2.7)
Length = 251
Score = 28.3 bits (60), Expect = 6.6
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = +2
Query: 398 RTQPRNVIGARESNDMPPDYGAPPEXQ----QREVTMEGENLQDLSV---ISSTEMTFSR 556
R Q R++ R + D+P D G P E Q QR T E N + +V IS T+ TF
Sbjct: 82 RKQSRHI--RRSTYDIPSDRGLPYEEQKKIHQRAKTNERVNPSNRNVLEGISETKQTFDV 139
Query: 557 EQILDGADTTLTEAALDRNTDASDSINHPTTSSRGQSLTRVTSGED 694
+ L + L+ + DA ++S+ Q+ + S D
Sbjct: 140 YEFLKEMELNSEVDGLEDSRDARKLSVEQSSSTSEQTAEKKQSPFD 185
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 347 DIREQNVDGSDYSEQALRTQPRNVIGARESNDMPPDYGAPPEXQQRE 487
D + DGS E + PR V +N P DY P+ + +
Sbjct: 749 DTKHAEEDGSRIQEPSEEPSPRPVSETEATNGSPEDYSDEPDMENTD 795
>SB_37932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/86 (19%), Positives = 42/86 (48%)
Frame = +3
Query: 135 LLIITHSLLLAEQTKEDQLAWIEWFQASQATTSIKLAIILNIREQTTQLANKGSSLASIT 314
L + S++ + K QL W +++ +++ +++ I T L + + LA+++
Sbjct: 253 LSFLIRSIMWFLELKYVQLVWKSVLRST--VKFLEILVVVVIPFVTLLLVDVSAFLANVS 310
Query: 315 IFSYG*TLGLQILENKMLTDPIILNR 392
++ Y + +LE + DP+ +R
Sbjct: 311 LYFYDKFASVSVLETHSIADPLSNSR 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,993
Number of Sequences: 59808
Number of extensions: 468222
Number of successful extensions: 1541
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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