Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G14
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 35 0.067
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 35 0.067
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 35 0.067
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 35 0.067
AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ... 33 0.15
AL023828-21|CAA19466.1| 381|Caenorhabditis elegans Hypothetical... 29 2.5
U64848-14|AAB04890.1| 382|Caenorhabditis elegans Hypothetical p... 29 3.3
Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 29 4.4
Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 28 7.7
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 28 7.7
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 28 7.7
AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical ... 28 7.7
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 116 QADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQG 265
++DG + Y+ PP SR +++ L PG ND + A Y + G
Sbjct: 200 ESDGAISAPEYSSPPFSRLTQQQQFRLSNGSPGRTVNDIFSAAEYRNWAG 249
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 116 QADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQG 265
++DG + Y+ PP SR +++ L PG ND + A Y + G
Sbjct: 398 ESDGAISAPEYSSPPFSRLTQQQQFRLSNGSPGRTVNDIFSAAEYRNWAG 447
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 116 QADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQG 265
++DG + Y+ PP SR +++ L PG ND + A Y + G
Sbjct: 466 ESDGAISAPEYSSPPFSRLTQQQQFRLSNGSPGRTVNDIFSAAEYRNWAG 515
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 116 QADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQG 265
++DG + Y+ PP SR +++ L PG ND + A Y + G
Sbjct: 398 ESDGAISAPEYSSPPFSRLTQQQQFRLSNGSPGRTVNDIFSAAEYRNWAG 447
>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
protein F28H6.4 protein.
Length = 1000
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 362 NVDGSDYSEQALRTQPRNVIGARESNDMPPDYGAPPEXQQREVTME 499
N D DY + RTQ R+ + R S P+ G P Q T E
Sbjct: 26 NYDDEDYEPPSKRTQKRSSLTKRNSKSKTPEVGKAPRKQTEHFTPE 71
>AL023828-21|CAA19466.1| 381|Caenorhabditis elegans Hypothetical
protein Y17G7B.18b protein.
Length = 381
Score = 29.5 bits (63), Expect = 2.5
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 83 QPTDNSSRPYRQADGQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQ 262
+P +NS Q + +P ++ P + E + +R E N +Y+ GN+ +Y
Sbjct: 70 KPAENSPFKKLQKNQYNSPRKDSRRPPQLSKEEKSAAENRKQKTEYFNKKYRYGNFDRYY 129
Query: 263 G--TNYAVSEQRI 295
G N S++R+
Sbjct: 130 GIRLNPGESDKRL 142
>U64848-14|AAB04890.1| 382|Caenorhabditis elegans Hypothetical
protein C50E3.12 protein.
Length = 382
Score = 29.1 bits (62), Expect = 3.3
Identities = 26/85 (30%), Positives = 36/85 (42%)
Frame = +2
Query: 452 DYGAPPEXQQREVTMEGENLQDLSVISSTEMTFSREQILDGADTTLTEAALDRNTDASDS 631
DY APP Q+R T +G Q L IS RE ++ +T EA + N + D
Sbjct: 181 DYPAPPGSQERNET-QGRFNQRLLEISPRSRRL-RENLVTSYNTE-NEARTEFNQNLRDQ 237
Query: 632 INHPTTSSRGQSLTRVTSGEDSERD 706
N PT + G+ L + D
Sbjct: 238 AN-PTFGNVGRMLLALNESNRQRSD 261
>Z81089-5|CAD89731.2| 933|Caenorhabditis elegans Hypothetical
protein F53H4.6 protein.
Length = 933
Score = 28.7 bits (61), Expect = 4.4
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = +2
Query: 356 EQNVDGSDYSEQALRTQPRNVIGARESNDMPPDYGAPPEXQQREVTMEGENLQDLSVISS 535
E+N D + A+ +P N R+S PD P ++R ++ D+ +I
Sbjct: 74 ERNEQRPDKNNDAIVIKPTNTSNDRKSLKRRPDALPDPPIEKRHKQTTVDSDDDVMIIER 133
Query: 536 T-EMTFSREQILDGADTTLTEAALDRNTDASDSINHPTTSSRGQSLTRVTSGEDSERDR 709
T E T S E D +++ RNT P ++TR+ ED + R
Sbjct: 134 TPEKTNSFETPDSIDDDNMSDDMRCRNT-------FPYIPESRTTVTRMVRSEDGKESR 185
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 464 PPEXQQREVTMEGENLQDLSVISSTE-MTFSREQILDGADTTLTEAALDRNTDASDSINH 640
P E + E +G ++SV TE + + G LT +S +
Sbjct: 668 PAEDEPEEEDDDGAGSDNVSVCQKTEERSDDDDDDSSGGGGGLTSTGSSNPNGSSSNFQI 727
Query: 641 PTTSSRGQSLTRVTSGEDSERDR 709
TTS G+S TSG D +++
Sbjct: 728 HTTSRSGESNVTPTSGGDQNQNQ 750
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +2
Query: 464 PPEXQQREVTMEGENLQDLSVISSTE-MTFSREQILDGADTTLTEAALDRNTDASDSINH 640
P E + E +G ++SV TE + + G LT +S +
Sbjct: 668 PAEDEPEEEDDDGAGSDNVSVCQKTEERSDDDDDDSSGGGGGLTSTGSSNPNGSSSNFQI 727
Query: 641 PTTSSRGQSLTRVTSGEDSERDR 709
TTS G+S TSG D +++
Sbjct: 728 HTTSRSGESNVTPTSGGDQNQNQ 750
>Z81465-2|CAB03861.1| 1642|Caenorhabditis elegans Hypothetical
protein C09F9.2 protein.
Length = 1642
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 623 KRQCFCPTQPRSV*CRLRRESVPARMSF 540
+RQCFCPT C L +S+ + F
Sbjct: 203 RRQCFCPTSRYGKTCELESDSIRSVSDF 230
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +2
Query: 125 GQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQGT--NYAVSEQRIV 298
G TP Q P + G PG P QY G PQ Q Y ++Q
Sbjct: 277 GPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQPQQAQFTYPPTQQMTP 336
Query: 299 TG 304
TG
Sbjct: 337 TG 338
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +2
Query: 125 GQQTPDNYTQPPTSRANERRPIGLDRMVPGEPSNDQYQAGNYPQYQGT--NYAVSEQRIV 298
G TP Q P + G PG P QY G PQ Q Y ++Q
Sbjct: 275 GPMTPGYPAQAPAAPRTTPGSAGPGTGPPGTPQRPQYPQGTNPQPQQAQFTYPPTQQMTP 334
Query: 299 TG 304
TG
Sbjct: 335 TG 336
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -3
Query: 151 CVIIRSLLTVCLSVRATAIVSRLAIA--VTIHVIFSWWIVSV 32
CV++ SL+ + LS+ +A+ ++ A+ V I V + WIVSV
Sbjct: 93 CVLV-SLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSV 133
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -3
Query: 151 CVIIRSLLTVCLSVRATAIVSRLAIA--VTIHVIFSWWIVSV 32
CV++ SL+ + LS+ +A+ ++ A+ V I V + WIVSV
Sbjct: 196 CVLV-SLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSV 236
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = -3
Query: 151 CVIIRSLLTVCLSVRATAIVSRLAIA--VTIHVIFSWWIVSV 32
CV++ SL+ + LS+ +A+ ++ A+ V I V + WIVSV
Sbjct: 209 CVLV-SLVLLVLSLLGSALFAKTALITFVLISVCYGTWIVSV 249
>AF000264-4|AAC71125.3| 631|Caenorhabditis elegans Hypothetical
protein F43E2.3 protein.
Length = 631
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 566 LDGADTTLTEAALDRNTDASDSINHPTTSSRGQSLTRVTSGEDS 697
++GA +D +TD++++I S+R S+T V SG+ S
Sbjct: 157 VNGAHVQQAMNRIDMSTDSANTILRSPYSTRSDSITSVDSGQCS 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,126
Number of Sequences: 27780
Number of extensions: 338796
Number of successful extensions: 1102
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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