Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G14
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.94 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.94 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.9  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   3.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   3.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.0  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 617 DASDSIN-HPTTSSRGQSLTRVTSGE 691
           + ++S++ HP   +RGQ  T++ SGE
Sbjct: 382 EENESVDKHPNRRARGQLRTKIESGE 407


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 437 NDMPPDYGAPPEXQQREVTMEGENLQDLSVISSTEMTFSRE 559
           N + PD+G PP   + ++      ++ +  IS  +MT+S +
Sbjct: 19  NSVRPDFGGPPATVEVDIM-----VRSMGPISEVDMTYSMD 54


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -2

Query: 230 GRCLARLEPFYPSQLVFFRLLC**EAVCNYQEFADRLPVCKGDC 99
           G  L++ E  +P+     +LLC  EA  NY    D       DC
Sbjct: 89  GALLSKGEESFPTARSLEKLLCNVEAEENYNLLEDIYETLSYDC 132



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -2

Query: 143 YQEFADRLPVCK----GDCYCQSAGHRRD 69
           +  F  +L V K    GD YC + G  RD
Sbjct: 523 FDSFCGQLDVYKVETIGDAYCVACGLHRD 551


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 476 VXQVELRSPVACRC 435
           V ++++R PV C+C
Sbjct: 124 VMEIKIREPVECKC 137


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 476 VXQVELRSPVACRC 435
           V ++++R PV C+C
Sbjct: 124 VMEIKIREPVECKC 137


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 409 EERNRRPRKQRHATGLRSST 468
           +ER R+ R +   TGLRS T
Sbjct: 12  DERFRQSRSEDSETGLRSRT 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,121
Number of Sequences: 438
Number of extensions: 4375
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)