Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G13
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...   105   6e-24
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...   103   3e-23
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   2.0  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score =  105 bits (251), Expect = 6e-24
 Identities = 53/115 (46%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +1

Query: 169 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 345
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK   YVY++ K   
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAV- 60

Query: 346 IPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 510
                RG  +K+R IWG + RPHGNSG+VRA+F  NLPA+  G  +RVMLYPS I
Sbjct: 61  -----RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score =  103 bits (246), Expect = 3e-23
 Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
 Frame = +1

Query: 169 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTP 345
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK   +VY++ K  P
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNK--P 59

Query: 346 IPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 510
           + G      +K+R IWG V+RPHGNSG VRA+F  NLP +  G  +RVMLYPS +
Sbjct: 60  VRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 402 HLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLAS 298
           ++ P  T LGFF   T  N  P    VH  +M AS
Sbjct: 333 NIIPVETALGFFTDNTPENPLPTSYQVHSHSMKAS 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,197
Number of Sequences: 5004
Number of extensions: 39255
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)