Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G13
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 124 7e-29
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 122 3e-28
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 105 3e-23
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.6
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.7
09_04_0201 + 15543318-15543488,15543956-15544069 29 3.6
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 29 3.6
04_03_0827 - 20108937-20109046,20109146-20109234,20109400-201095... 29 3.6
04_01_0053 + 551027-553024 28 4.8
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 28 4.8
09_02_0445 + 9446171-9447496 28 6.3
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 8.3
04_04_1576 - 34551095-34552645 27 8.3
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 124 bits (298), Expect = 7e-29
Identities = 58/110 (52%), Positives = 74/110 (67%)
Frame = +1
Query: 181 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKKRTPIPGGP 360
RLY + GYKR NQ+ENT+L+++EG + + +Y GK YVY+AK ++ GG
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVYKAKTKS---GG- 66
Query: 361 RGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 510
T R IWGKVTRPHGNSG VRAKFKSNLP +MG ++RV +YPS I
Sbjct: 67 ----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGRKVRVFMYPSSI 112
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 122 bits (293), Expect = 3e-28
Identities = 57/118 (48%), Positives = 77/118 (65%)
Frame = +1
Query: 157 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 336
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 337 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 510
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++RV +YPS I
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 111
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 105 bits (251), Expect = 3e-23
Identities = 50/105 (47%), Positives = 67/105 (63%)
Frame = +1
Query: 157 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCVYVYRAKK 336
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK YVY+AK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKT 61
Query: 337 RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 471
++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 62 KS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 485 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 351
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 504 GRIQHHSYSVSHSLGREVRLE 442
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 410 GRVTLPQIARSLVFLPRGPPGIGVLFL 330
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 375 GFFATGTSGNWCPLLSSVHIDAMLA 301
GFFA G+WC LL+ ++I + A
Sbjct: 171 GFFAAAIIGSWCNLLTVIYIGFVCA 195
>04_03_0827 -
20108937-20109046,20109146-20109234,20109400-20109548,
20109801-20109942,20110530-20110645,20111141-20111458
Length = 307
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -3
Query: 368 LPRGPPGIGVLFLALYT*TQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPR 216
+P+ PPG LA + Q L R+FA T A SC +RR R
Sbjct: 87 VPQPPPGADPNALASFKQAQALAGGPLVQARNFAVMTGANAGISCVMRRIR 137
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -2
Query: 417 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 328
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/97 (24%), Positives = 36/97 (37%)
Frame = +2
Query: 197 PYSQDISVVYATSTRTPLSSRLKEQKTVMMQSFMLASIASMCTELRRGHQFPEVPVAKKP 376
P S +S R LSS ++ + M S M + S+C+ G++ +A P
Sbjct: 385 PSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERERADMASSP 444
Query: 377 SCVLSGAR*PAHMATLAVSEPSSSLTSLPRLWDTEYE 487
C A L + PSS+ R D E
Sbjct: 445 GCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKARE 481
>09_02_0445 + 9446171-9447496
Length = 441
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -2
Query: 432 DTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLASIKDCIITVFCS--FN 259
+T W GH P + F++G G W S ++ + + + CS +
Sbjct: 220 ETPYCGYWHGHGTPPRPRAYVFSSGVDGGWRESDSGSDVELPSLELINFVGRAGCSLYWG 279
Query: 258 LEESGVLVLVA*TTLISCEYGLCVQPAVAG 169
L+ ++ + TT E+ L PA+ G
Sbjct: 280 LDGKDAMLALHKTT---AEFSLVTIPAIVG 306
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 362 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 493
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>04_04_1576 - 34551095-34552645
Length = 516
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 328 LCTHRRNACQHKRLHHYGLLLL 263
LC H AC RLH +GL LL
Sbjct: 77 LCNHLLIACFKSRLHRHGLRLL 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,111
Number of Sequences: 37544
Number of extensions: 314935
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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