Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G10
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)              176   1e-44
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 102   3e-22
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   75   7e-14
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      48   9e-06
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            41   0.001
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                40   0.002
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              39   0.003
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              32   0.35 
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     29   4.3  
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      28   7.5  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 27   9.9  
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083)                   27   9.9  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score =  176 bits (428), Expect = 1e-44
 Identities = 80/137 (58%), Positives = 107/137 (78%)
 Frame = +3

Query: 192 QIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIAR 371
           QIQHPTASLIAR                V++IGELLKQAD+++SEGLHPR++TEGF++A+
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAK 229

Query: 372 NKSLEVLESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVD 551
            K+LEVLE +K+  E+ R+ L++VA+TSL+TKV   LAD+LT+  VDAVLTIR P KP+D
Sbjct: 230 KKALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPID 289

Query: 552 LHMVEIMEMKHKTATET 602
           LHMVE+MEM+HKT +++
Sbjct: 290 LHMVEVMEMRHKTDSDS 306



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 12  NPQXXXXXXXXXXXXXXXXXKGIQAVMXTXLGPKGTXXMLVSGAG 146
           NP+                 +G+Q V+ T LGPKGT  +L    G
Sbjct: 8   NPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  102 bits (244), Expect = 3e-22
 Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
 Frame = +3

Query: 72  KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
           + + +++ T LGPKG   M+VS  G + +T DG  +L  +++ H  A L+          
Sbjct: 40  RAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNE 99

Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM--KIPIEV-A 422
                   V+L G LL+ A+  +  G+HP  I +G+++A   +LE ++S+    P++   
Sbjct: 100 IGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNFPVDKDN 159

Query: 423 RENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEIMEMKHKTATE 599
           +E+L+  A T+L +K+       L +  VDAVL++     K VD  ++++   +     +
Sbjct: 160 KESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEGGKLDD 219

Query: 600 TVLVKGLXMDHGARHP 647
           TVLVKG+ +D    HP
Sbjct: 220 TVLVKGVVVDKDMSHP 235


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
 Frame = +3

Query: 87  VMXTXLGPKGTXXMLVSGA--GXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXXXXX 260
           ++ + LGPKG   +L S    G I++T DG  +L  + I +P A ++             
Sbjct: 35  LVKSTLGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGD 94

Query: 261 XXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI----PIEVARE 428
                 +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  RE
Sbjct: 95  GTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRE 154

Query: 429 NLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVL 608
           +L+++ART+L +K+     D      VDAVL ++  G   DL+ ++I++       ++ L
Sbjct: 155 DLMNIARTTLSSKILVQHRDHFAKLAVDAVLRLKGSG---DLNAIQIIKKLGGGMVDSFL 211

Query: 609 VKGLXMD 629
            +G  +D
Sbjct: 212 DEGFLLD 218


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = +3

Query: 156 LTKDGNVLLHXLQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLH 335
           +T DGN +L  +Q++HP A  +                  ++L GE +  A+ F+ + +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 336 PRIITEGFDIARNKSLEVLE 395
           P  I   + +A +  +++L+
Sbjct: 61  PTQIIAAYRLAMDDMIDILK 80


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
 Frame = +3

Query: 279 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EVARENLVDVA 446
           +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++A
Sbjct: 19  VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78

Query: 447 RTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIME 575
           RT+L +K+     D      VDAVL ++  G   DL+ ++I++
Sbjct: 79  RTTLSSKILVQHRDHFAKLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/78 (20%), Positives = 35/78 (44%)
 Frame = +3

Query: 72  KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
           +  + ++    GP G   ML S +G I +T  G+++L  L + +PT  +I          
Sbjct: 10  QNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGR 69

Query: 252 XXXXXXXXVLLIGELLKQ 305
                   ++++ E+ ++
Sbjct: 70  TGSGASYFIIILAEIFRE 87


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/76 (22%), Positives = 35/76 (46%)
 Frame = +3

Query: 168 GNVLLHXLQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRII 347
           GNV    +Q++HP A  +                  ++L GE +  A+ F+ + +HP  I
Sbjct: 202 GNVQAAKIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQI 261

Query: 348 TEGFDIARNKSLEVLE 395
              + +A +  +++L+
Sbjct: 262 IAAYRLAMDDMIDILK 277


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
 Frame = +3

Query: 90  MXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQI----QHPTASLIARXXXXXXXXXX 257
           +   LGPKG   ++    G  K+TKDG  +   +++    Q+  A L+            
Sbjct: 83  VAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAG 142

Query: 258 XXXXXXVLLIGELLKQADIFISEGLHPRIITE-----GFDIARNKSLEVLESMKI-PIEV 419
                  +L   +  +  + +S+G +P+ ++      G+D A N  ++++++  I P +V
Sbjct: 143 DGTTTATVLARSIATEGFLHVSKGANPQEVSSLENAMGYDAANNTYVDMIQAGIIDPTKV 202

Query: 420 ARENLVDVA 446
            R  + D A
Sbjct: 203 VRTAITDAA 211


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +3

Query: 78  IQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLI 221
           I   + T LGP+G   ++V G G   ++ DG  +++ L I HP A  +
Sbjct: 667 IADAVRTTLGPRGMDKLIVDGRGKATISNDGATIINLLDIVHPAAKTL 714


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 72  KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDG 170
           K +   + T LGPKG   M+  G G + +T DG
Sbjct: 34  KAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 492 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLXMDHGAR 641
           LT    D +L +R+  PG+ V+ HM++ ++ K  T  E +    L   H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175


>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 472 WTLVLSEVRATSTKFSRATSIGIFIDSKTSNDLLRAMSKPSVMILGCKPSLMNMSACLSS 293
           WTL+ S    T T     T       S +++ L+ A++ P + ++     L+NMS C S 
Sbjct: 375 WTLLSSTPTITPTPTVTPTPTPTV--SLSTHILVVAVAVPILFLISLPCLLVNMSCCCSC 432

Query: 292 SPMR 281
            P R
Sbjct: 433 KPKR 436


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 390 LESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTP 536
           ++ +K+P EVA    VD  + S+   V P    V    CVD V    TP
Sbjct: 403 VDPVKVPSEVAVTPCVDPVKVSVTPYVEP--VKVSVTPCVDPVKVAVTP 449


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 203 VLDLQXM*QNIAILGELYXPSTRNQHXXRAF 111
           V DL+ + +    LG++Y P  RN H  R F
Sbjct: 29  VEDLKQVFKKYGDLGDIYIPRDRNTHESRGF 59


>SB_7073| Best HMM Match : ResIII (HMM E-Value=0.083)
          Length = 1105

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +2

Query: 101  PWSERHXXN--VGFWCWGHKA--HQGWQCFVTXAANPAPYSLTDCSSVNRSX*CHWXWYN 268
            PW ++   +  +  W  G+      G++C      NP  YS  DC S   S   H     
Sbjct: 819  PWGDKEGPHDMLKEWAQGNIRWFESGYRCLCEDCGNP--YSTCDCGSAAPSSRLHDIKGR 876

Query: 269  IYCPP 283
            I+C P
Sbjct: 877  IWCQP 881


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,197
Number of Sequences: 59808
Number of extensions: 343127
Number of successful extensions: 1082
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)