Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G10
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 198 3e-51
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 197 6e-51
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 109 2e-24
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 83 2e-16
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 82 4e-16
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 81 5e-16
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 67 8e-12
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 65 4e-11
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 63 1e-10
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 55 4e-08
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 42 5e-04
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 40 0.001
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 40 0.001
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 37 0.010
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 35 0.054
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 34 0.094
At4g25160.1 68417.m03622 protein kinase family protein contains ... 29 2.0
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 29 2.7
At1g20740.1 68414.m02598 expressed protein ; expression supporte... 29 2.7
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 29 3.5
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 28 6.1
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 27 8.1
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 198 bits (482), Expect = 3e-51
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
KG+Q V+ + LGPKGT MLV G+G IKLTKDGN LL +QIQ+PTA +IAR
Sbjct: 27 KGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDI 86
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EV 419
V+ IGEL+KQ++ I EG+HPR++ +GF+IA+ +L+ L++ K P+ E
Sbjct: 87 SGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEP 146
Query: 420 ARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATE 599
+E L VART+L+TK++ LAD LTD V++VL IR P +P+DL MVEIM M+HK +
Sbjct: 147 DKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVD 206
Query: 600 TVLVKGLXMDHGARHP 647
T LV+GL +DHG+RHP
Sbjct: 207 TRLVEGLVLDHGSRHP 222
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 197 bits (480), Expect = 6e-51
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
KG+Q V+ + LGPKGT MLV G+G IKLTKDGN LL +QIQ+PTA +IAR
Sbjct: 27 KGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDI 86
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EV 419
V+ IGEL+KQ++ I EG+HPR++ +GF+IA+ +L+ L++ K P+ EV
Sbjct: 87 SGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEV 146
Query: 420 ARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATE 599
+E L VART+L+TK++ LAD LTD V++VL IR P + +DL MVEIM M+HK +
Sbjct: 147 DKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVD 206
Query: 600 TVLVKGLXMDHGARHP 647
T LV+GL +DHG+RHP
Sbjct: 207 TRLVEGLVLDHGSRHP 222
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 109 bits (261), Expect = 2e-24
Identities = 58/189 (30%), Positives = 101/189 (53%), Gaps = 3/189 (1%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
+ + + T LGPKG M+ + G + +T DG +L+ +++ P A ++
Sbjct: 38 RAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSA 97
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVA-RE 428
V++ G LLK+ ++ G+HP +I++ A K++++L +M +P+E+ R+
Sbjct: 98 AGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVELTDRD 157
Query: 429 NLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKP--VDLHMVEIMEMKHKTATET 602
+LV A TSL +KV + +L VDAVL++ P KP VDL ++I++ T +T
Sbjct: 158 SLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDT 217
Query: 603 VLVKGLXMD 629
VKGL D
Sbjct: 218 HTVKGLVFD 226
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/194 (23%), Positives = 98/194 (50%), Gaps = 6/194 (3%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
+ + ++ T LGP G MLV G + +T DG +L L+++HP A ++
Sbjct: 29 QAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDRE 88
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-PIE-VAR 425
V++ ELLK+A+ + +HP I G+ +A +S + +E + +E + +
Sbjct: 89 VGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGK 148
Query: 426 ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHM----VEIMEMKHKTA 593
L++ A+TS+ +K+ +D + V+AVL+++ + ++ + I++ ++A
Sbjct: 149 VPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKAHGQSA 208
Query: 594 TETVLVKGLXMDHG 635
++ L+ G ++ G
Sbjct: 209 RDSYLLNGYALNTG 222
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 81.8 bits (193), Expect = 4e-16
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
K + ++ T LGP+ ML+ G I +T DGN +L L + HP A +
Sbjct: 29 KAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEE 88
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEV-ARE 428
++L GE+L A+ F+ + HP +I + A S+ VL+ + + I++ R
Sbjct: 89 VGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSIDINDRS 148
Query: 429 NLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 527
++ + ++ + TK D++ D +DA T+
Sbjct: 149 QVLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 181
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 81.4 bits (192), Expect = 5e-16
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
K + ++ + LGPKG ML G I +T DG +L + + + A L+
Sbjct: 38 KAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYE 97
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLE--SMKIPIEVAR 425
V++ G LL+QA+ + G+HP I EG+++A ++E LE + K +V
Sbjct: 98 IGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNN 157
Query: 426 -ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEIMEMKHKTATE 599
E LV T+L +K+ L + V AVL + + V+L ++++ +
Sbjct: 158 YEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLED 217
Query: 600 TVLVKGLXMDHGARHP 647
T L+ G+ +D HP
Sbjct: 218 TELIYGILIDKDMSHP 233
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 67.3 bits (157), Expect = 8e-12
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 6/190 (3%)
Frame = +3
Query: 78 IQAVMXTXLGPKGTXXMLVS-GAGX-IKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
I ++ + LGPKG +L S G G + +T DG +L L I +P A ++
Sbjct: 30 ISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDE 89
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF----DIARNKSLEVLESMKIPIEV 419
V+L GELL++A+ ++ +HP I G+ + ARN L+ + K E
Sbjct: 90 VGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRVIDNKDNAEK 149
Query: 420 ARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATE 599
R +L+ +A T+L +K+ + + VDAV ++ +L ++I++ + +
Sbjct: 150 FRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLK---GSTNLEAIQIIKKPGGSLKD 206
Query: 600 TVLVKGLXMD 629
+ L +G +D
Sbjct: 207 SFLDEGFILD 216
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 64.9 bits (151), Expect = 4e-11
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Frame = +3
Query: 72 KGIQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXX 251
K + + T LGP G M+++ + +T D +++ L+IQHP A L+
Sbjct: 37 KELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEE 96
Query: 252 XXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM----KIPIEV 419
+ GELL+ A+ I GLHP I G+ A +K++E+LE + ++V
Sbjct: 97 IGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQLVETGSETMDV 156
Query: 420 A-RENLVDVARTSLKTK---VHPSLADVLTDACV 509
++ ++ R ++ +K + ++TDAC+
Sbjct: 157 RNKDEVISRMRAAVASKQFGQEEIICSLVTDACI 190
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 63.3 bits (147), Expect = 1e-10
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
Frame = +3
Query: 87 VMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPTASLIARXXXXXXXXXXXXX 266
V+ T LGP+G ++ G + ++ DG ++ L I HP A ++
Sbjct: 38 VVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGT 97
Query: 267 XXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE---VAREN-- 431
VLL E LK+A FI +G+H + + + A ++ ++ + + IE V +
Sbjct: 98 TTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGL 157
Query: 432 LVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLV 611
L A T+L +K+ + VDAV+ I G L+++ I ++ ++ LV
Sbjct: 158 LAKCAATTLSSKLIGGEKEFFATMVVDAVMAI---GNDDRLNLIGIKKVPGGNMRDSFLV 214
Query: 612 KGL 620
G+
Sbjct: 215 DGV 217
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 55.2 bits (127), Expect = 4e-08
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)
Frame = +3
Query: 276 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLE--SMKIPIEVAR-ENLVDVA 446
V++ G LL+QA+ + G+HP I EG+++A ++E LE + K +V E LV
Sbjct: 30 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTC 89
Query: 447 RTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEIMEMKHKTATETVLVKGLX 623
T+L +K+ L + V AVL + + V+L ++++ +T L+ G+
Sbjct: 90 MTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGIL 149
Query: 624 MDHGARHP 647
+D HP
Sbjct: 150 IDKDMSHP 157
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 41.5 bits (93), Expect = 5e-04
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXXXXXXXXXX 269
LGPKG +L S G ++ DG + ++++ P A L+ +
Sbjct: 82 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTT 141
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLVDVAR 449
V+L L+ + ++ G +P +IT G + K+L V E K+ EV L DVA
Sbjct: 142 TSVVLAQGLIAEGVKVVAAGANPVLITRGIE-KTTKAL-VAELKKMSKEVEDSELADVAA 199
Query: 450 TSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 575
S +V +A+ + V+T+ GK + L++VE M+
Sbjct: 200 VSAGNNYEVGNMIAEAMAKVGRKGVVTLE-EGKSAENSLYVVEGMQ 244
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 39.9 bits (89), Expect = 0.001
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXXXXXXXXXX 269
LGPKG +L S G ++ DG + ++++ P A L+ +
Sbjct: 86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLVDVAR 449
V+L + + ++ G +P +IT G I + V E K+ EV L DVA
Sbjct: 146 TSVVLAQGFIAEGVKVVAAGANPVLITRG--IEKTAKALVTELKKMSKEVEDSELADVAA 203
Query: 450 TSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 575
S ++ +A+ ++ V+T+ GK + L++VE M+
Sbjct: 204 VSAGNNDEIGNMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 248
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 39.9 bits (89), Expect = 0.001
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXXXXXXXXXX 269
LGPKG +L S G ++ DG + ++++ P A L+ +
Sbjct: 86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLVDVAR 449
V+L + + ++ G +P +IT G I + V E K+ EV L DVA
Sbjct: 146 TSVVLAQGFIAEGVKVVAAGANPVLITRG--IEKTAKALVTELKKMSKEVEDSELADVAA 203
Query: 450 TSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 575
S ++ +A+ ++ V+T+ GK + L++VE M+
Sbjct: 204 VSAGNNDEIGNMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 248
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 37.1 bits (82), Expect = 0.010
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXXXXXXXXXX 269
LGPKG +L S G ++ DG + ++++ P A L+ +
Sbjct: 82 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 141
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLVDVAR 449
V+L + + ++ G +P +IT G + + L+ M EV L DVA
Sbjct: 142 TSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMS--KEVEDSELADVAA 199
Query: 450 TSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 575
S +V +A+ ++ V+T+ GK + L++VE M+
Sbjct: 200 VSAGNNHEVGSMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 244
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 34.7 bits (76), Expect = 0.054
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Frame = +3
Query: 78 IQAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXX 245
+ ++ LGPKG +L + G ++ DG +L ++++ P L+ +
Sbjct: 62 VAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTN 121
Query: 246 XXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVAR 425
++L L+ + IS G +P + G + K+L VLE + E+
Sbjct: 122 DLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIE-KTTKAL-VLELKSMSREIED 179
Query: 426 ENLVDVARTS 455
L VA S
Sbjct: 180 HELAHVAAVS 189
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 33.9 bits (74), Expect = 0.094
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 555 ADQQVCLEFEW*VPHQRKHQLAHLPSLG 472
+ + +CL ++ PH +KH+ HLPS+G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +3
Query: 369 RNKSLEVLESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPV 548
+++ L LE++K E AR + V+ + P L DV+ + CV A G
Sbjct: 738 KDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMNEPCVAA------DGYTY 791
Query: 549 DLHMVEIMEMKHKTATET 602
D H +E +H T+ T
Sbjct: 792 DRHAIEEWLKEHNTSPMT 809
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 29.1 bits (62), Expect = 2.7
Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
Frame = +3
Query: 81 QAVMXTXLGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQIQHPT----ASLIARXXXXXXX 248
+AV T +GPKG ++ S G K+TKDG + + Q A L+ +
Sbjct: 55 EAVKVT-MGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNK 113
Query: 249 XXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARE 428
+L +L + ++ G++ + G ++A + L+S + I E
Sbjct: 114 VAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMISTP-E 172
Query: 429 NLVDVARTSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIMEM 578
+ VA S + ++ +A + + V+T+ G +D L +VE M++
Sbjct: 173 EITQVATISANGEREIGELIARAMEKVGKEGVITV-ADGNTLDNELEVVEGMKL 225
>At1g20740.1 68414.m02598 expressed protein ; expression supported
by MPSS
Length = 266
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 357 FDIARNKSLEVLESMKIPIEVARENLVDVARTSLKTKVHPSLADVLTDA 503
F+ A +++LE LES + P + A+ + D R H +AD+ +++
Sbjct: 85 FNGAESRTLEFLESNESPEDFAKSSAADYIRNKNTAAFHLIVADIASNS 133
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 388 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSP 287
TS+ L+ + K + IL C P L N A SS+P
Sbjct: 628 TSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAP 661
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 27.9 bits (59), Expect = 6.1
Identities = 33/166 (19%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQ----IQHPTASLIARXXXXXXXXXXXXXX 269
+GPKG ++ G K+TKDG + ++ I++ ASL+ +
Sbjct: 61 MGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTT 120
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARE-NLVDVA 446
+L + + ++ G++ + G +A + + L+S I + E V
Sbjct: 121 CATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTI 180
Query: 447 RTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPV--DLHMVEIMEM 578
+ + ++ +A + + V+TI+ GK + +L +VE M++
Sbjct: 181 SANGEREIGELIAKAMEKVGKEGVITIQ-DGKTLFNELEVVEGMKL 225
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 27.5 bits (58), Expect = 8.1
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 8/167 (4%)
Frame = +3
Query: 102 LGPKGTXXMLVSGAGXIKLTKDGNVLLHXLQ----IQHPTASLIARXXXXXXXXXXXXXX 269
+GPKG ++ G K+TKDG + ++ I++ ASL+ +
Sbjct: 62 MGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTT 121
Query: 270 XXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEVARENLVDVAR 449
+L + + ++ G++ + G +A + + L+S I + E + V
Sbjct: 122 CATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSRARMISTS-EEIAQVGT 180
Query: 450 TSLK--TKVHPSLADVLTDACVDAVLTIRTPGKPV--DLHMVEIMEM 578
S ++ +A + + V+TI+ GK + +L +VE M++
Sbjct: 181 ISANGDREIGELIAKAMETVGKEGVITIQ-DGKTLFNELEVVEGMKI 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,430,476
Number of Sequences: 28952
Number of extensions: 230821
Number of successful extensions: 535
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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