Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G08
         (549 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             193   9e-50
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.067
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.12 
SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.8  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  193 bits (470), Expect = 9e-50
 Identities = 89/133 (66%), Positives = 106/133 (79%), Gaps = 12/133 (9%)
 Frame = +3

Query: 105 LGVXRSXKPLSYHKDVGLGFKPP------------REAIEGTYIDKKCPFTGNVSIRGRI 248
           LG     K L + ++VGLGFK P            REAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 23  LGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDKKCPFTGNVSIRGRI 82

Query: 249 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 428
           LTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFRD+ +GD++T+G+CR
Sbjct: 83  LTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFRDIALGDLITVGQCR 142

Query: 429 PLSKTVRFNVLKV 467
           PLSKTVRFNVLKV
Sbjct: 143 PLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 399 GDIVTIGECRPLSKTVRFNVLKV 467
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +3

Query: 219 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 398
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 399 GDIVTIGECRPLSKTVRFNVLKV 467
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_19683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
 Frame = +3

Query: 33  QNGGSSGTLIPKTTSSLSXT-ASQGLGVXRSXKPLS--YHKDVGLGFKPPREAIEGTYID 203
           +NG  S    P+   S+S T AS G       + L   Y        +   E I+    D
Sbjct: 181 ENGNESEKKAPEPPQSISNTYASSGTVSKFLEEELQRIYGDSSIFDNEMENEDIQELGFD 240

Query: 204 KKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRR 302
           + CP   +  IR  +   V+   K    IV+RR
Sbjct: 241 RDCPIGNDNDIRDAVKNEVISDEKQSMFIVVRR 273


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 246 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 383
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,528
Number of Sequences: 59808
Number of extensions: 297534
Number of successful extensions: 670
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)