Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G08
(549 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo... 178 2e-45
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A) 173 9e-44
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C) 169 8e-43
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 39 0.003
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si... 37 0.010
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ... 31 0.38
At3g19570.2 68416.m02482 expressed protein contains Pfam domain,... 28 4.7
At3g19570.1 68416.m02481 expressed protein contains Pfam domain,... 28 4.7
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila... 28 4.7
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit... 27 6.2
At4g26980.1 68417.m03882 expressed protein 27 8.3
>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
Length = 159
Score = 178 bits (433), Expect = 2e-45
Identities = 80/110 (72%), Positives = 94/110 (85%)
Frame = +3
Query: 138 YHKDVGLGFKPPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHY 317
+ K++GLGFK PREAIEGTYID+KCPFTG VSIRGRIL+G KMQRTI++RRDYLH+
Sbjct: 35 FWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHF 94
Query: 318 LPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 467
+ KY R+EKRH N+ H+SPCFR V+ GD VTIG+CRPLSKTVRFNVLKV
Sbjct: 95 VKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIGQCRPLSKTVRFNVLKV 143
>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
Length = 160
Score = 173 bits (420), Expect = 9e-44
Identities = 76/110 (69%), Positives = 91/110 (82%)
Frame = +3
Query: 138 YHKDVGLGFKPPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHY 317
+ K++GLGFK PREAI+G Y+DKKCPFTG VSIRGRIL G KMQRTI++RRDYLH+
Sbjct: 35 FWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHF 94
Query: 318 LPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 467
+ KY R+EKRH N+ H+SPCFR V+ GD + IG+CRPLSKTVRFNVLKV
Sbjct: 95 VKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIGQCRPLSKTVRFNVLKV 143
>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
Length = 159
Score = 169 bits (412), Expect = 8e-43
Identities = 76/110 (69%), Positives = 90/110 (81%)
Frame = +3
Query: 138 YHKDVGLGFKPPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHY 317
+ K++GLGFK PREAI+G YID KCPFTG VSIRGRIL G KMQRTI++RR+YLH+
Sbjct: 35 FWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHF 94
Query: 318 LPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 467
+ KY R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 95 VKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 143
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 255 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 431
G V KMQ+++V+ D L + YNR+ KR H +D IGD V + RP
Sbjct: 6 GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62
Query: 432 LSKTVRFNVLKV 467
LSK + V ++
Sbjct: 63 LSKNKHWIVAEI 74
>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GB:Y08858 from
[Nicotiana plumbaginifolia]
Length = 105
Score = 36.7 bits (81), Expect = 0.010
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = +3
Query: 243 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 422
+ + G V KMQ ++V+ D L + YNR+ KR H IGD V +
Sbjct: 2 KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59
Query: 423 CRPLSK 440
RPLSK
Sbjct: 60 SRPLSK 65
>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
CS17 (RPS17) identical to 30S ribosomal protein S17,
chloroplast precursor GB:P16180 [Arabidopsis thaliana]
Length = 149
Score = 31.5 bits (68), Expect = 0.38
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +3
Query: 243 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 422
+ + G V +T+ + L PKY R + + H P ++GD+V + +
Sbjct: 51 KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108
Query: 423 CRPLSKTVRFNVLKV 467
RP+SKT F L V
Sbjct: 109 SRPISKTKSFVALPV 123
>At3g19570.2 68416.m02482 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 644
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 4 PADAFFHLSSKMAXHPERSFQKQPPVFLXPQVKVLVXSGAXNR*ATTRMWASVSSLPVRR 183
P+ +SSK + + F P+ P+ GA + +++WA+ +S P R
Sbjct: 349 PSSRISSISSKFSQ--SKRFSSDSPLTSSPRGMTSPIRGATRPASPSKLWATATSAPART 406
Query: 184 LRVPTLTRS 210
P+ R+
Sbjct: 407 SSSPSRVRN 415
>At3g19570.1 68416.m02481 expressed protein contains Pfam domain,
PF04484: Family of unknown function (DUF566)
Length = 627
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 4 PADAFFHLSSKMAXHPERSFQKQPPVFLXPQVKVLVXSGAXNR*ATTRMWASVSSLPVRR 183
P+ +SSK + + F P+ P+ GA + +++WA+ +S P R
Sbjct: 349 PSSRISSISSKFSQ--SKRFSSDSPLTSSPRGMTSPIRGATRPASPSKLWATATSAPART 406
Query: 184 LRVPTLTRS 210
P+ R+
Sbjct: 407 SSSPSRVRN 415
>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
to SP|P36175 O-sialoglycoprotein endopeptidase (EC
3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
contains Pfam profile PF00814: Glycoprotease family
Length = 480
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 129 PLSYHKDVGL---GFKPP-REAIEGTYIDKKCP 215
P+ YHKD G K R AIE ID KCP
Sbjct: 285 PMKYHKDCNFSYAGLKTQVRLAIEAKEIDAKCP 317
>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
SP|Q43143; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 206
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 240 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 356
G+++ GVV+ +R + + R + L NRF RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206
>At4g26980.1 68417.m03882 expressed protein
Length = 343
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 171 PREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 269
PREA+ +D+ PF ++ + ++TGVVQK
Sbjct: 244 PREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,832,745
Number of Sequences: 28952
Number of extensions: 204986
Number of successful extensions: 455
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -