Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G06
         (546 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   7.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.3  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 114 SNSSLELGTEXFWFDVQNFRCKKS 43
           S++ +E  +  +WF V+   CK+S
Sbjct: 389 SDAEIEKLSTVYWFTVEFGLCKES 412


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 174 HCQWFQEPFGH 206
           HC W    FGH
Sbjct: 98  HCDWLYGIFGH 108


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 116 LATPAWNLARRXSGLMSRISGAKRVPEXETCLTT 15
           L+TP+ + A + SGL S +S +   P      TT
Sbjct: 129 LSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTT 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,337
Number of Sequences: 336
Number of extensions: 1335
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)