Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G06
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 69 3e-13
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 28 1.0
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.8
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.2
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 5.5
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 5.5
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 5.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 5.5
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 5.5
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 5.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 69.3 bits (162), Expect = 3e-13
Identities = 41/134 (30%), Positives = 56/134 (41%)
Frame = +1
Query: 1 FSSGLVVKQVSXSGTLFAPEILDIKPEXLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 180
F+ G+ V + G +F+PEILD+ E L + + + A+SL YPTI S HS+
Sbjct: 181 FTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVV 240
Query: 181 NGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXX 360
N +KNL+ K F+ DPS F
Sbjct: 241 NAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEE 298
Query: 361 XXXXDDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 299 EEESDEDMGFGLFD 312
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 264 LNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTE 85
L L+ G S+ SSDG + + + ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 84 XFWFDVQNF 58
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 27 GLXFWNSFCT*NSGHQTRXSPCQ 95
GL FW+S T N+ +QTR C+
Sbjct: 21 GLVFWSSVATINAMYQTRPLYCE 43
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 243 GSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSS 103
G FF + CD + G K + N S N K++Y +N S
Sbjct: 405 GKFFSQHSCDLASGNKSAQEGQNQFLSMVESEAKNLMNKTNYSANQS 451
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -1
Query: 267 VLNELLDGGSFFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGT 88
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 87 E 85
E
Sbjct: 1076 E 1076
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 5.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = +1
Query: 373 DDDMGFGLFD 402
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,294
Number of Sequences: 5004
Number of extensions: 21646
Number of successful extensions: 51
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -