Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G06
         (546 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)                      28   5.7  
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)                 28   5.7  
SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -1

Query: 201 QKVLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEXFWFDVQNFR 55
           Q + +++  G+     SW+SN      +  + S++ G E F+ D+ + R
Sbjct: 545 QFIADSLPGGLSSRVLSWISNKVNVRKFFQHISVQFGREYFYSDLPSRR 593


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +3

Query: 90  CQVPSWXXXXXXXFFGYWIPNYCFSPAFHCQWFQEPFGH 206
           C  P           GYW+ NYC     +CQ     FGH
Sbjct: 318 CNTPDSYIGIGAKQSGYWVGNYCMQ---YCQVKLAAFGH 353


>SB_32712| Best HMM Match : PAN (HMM E-Value=0.18)
          Length = 542

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 195 VLETIGNGMRG*SNSWVSNSQRKSSYISNSSLELGTEXF 79
           +L + GN  R  ++SWVSN  R S  ++   L   T  F
Sbjct: 236 LLMSFGNTRRDGTDSWVSNQCRHSCTVTYGGLYASTNGF 274


>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
          Length = 433

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = -2

Query: 146 YPIAKERAATLATPAWNLARRXSGLMSRISGAKR 45
           YP  K   A L + AW       G   RISG +R
Sbjct: 342 YPDIKSVCAALQSTAWQTGSSARGCAPRISGGRR 375


>SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 138 YWIPNYCFSPAFHCQWFQEPFGHR 209
           Y++ NY F  + +C++F + F HR
Sbjct: 6   YFVGNYSFVASENCKYFAQLFAHR 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,042
Number of Sequences: 59808
Number of extensions: 179278
Number of successful extensions: 334
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)