Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G06
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       90   1e-18
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    89   2e-18
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    88   4e-18
At5g45595.1 68418.m05602 hypothetical protein                          27   8.2  

>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 43/93 (46%), Positives = 59/93 (63%)
 Frame = +1

Query: 1   FSSGLVVKQVSXSGTLFAPEILDIKPEXLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 180
           FS GLVV+ V  +G++F PE+L++  + L  KF AGV+ + ALSLAI YPT+A+APH   
Sbjct: 186 FSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFL 245

Query: 181 NGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSKF 279
           N +KN+L                KEF+KDP+KF
Sbjct: 246 NAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278


>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 41/93 (44%), Positives = 59/93 (63%)
 Frame = +1

Query: 1   FSSGLVVKQVSXSGTLFAPEILDIKPEXLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 180
           FS GLVV+ V  +G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   
Sbjct: 185 FSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFI 244

Query: 181 NGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSKF 279
           N +KN L                KEF+KDPSKF
Sbjct: 245 NAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 40/93 (43%), Positives = 59/93 (63%)
 Frame = +1

Query: 1   FSSGLVVKQVSXSGTLFAPEILDIKPEXLRAKFQAGVANVAALSLAIGYPTIASAPHSIA 180
           FS GLVV+ V  +G++F+PE+LD+  + L  KF +G++ V +L+LA+ YPT+A+APH   
Sbjct: 185 FSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFI 244

Query: 181 NGFKNLLXXXXXXXXXXXXXXXXKEFIKDPSKF 279
           N +KN L                KE++KDPSKF
Sbjct: 245 NAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277


>At5g45595.1 68418.m05602 hypothetical protein
          Length = 143

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 237 FFKLNLCDSSDGQKVLETIGNGMRG*SNSWVSN-SQRKSSYISNSSLEL 94
           +FKLN   +S G   L T G  +R    +WV +   R SS +  S+L L
Sbjct: 80  WFKLNTDGASRGNPGLATAGGVIRDAVGNWVQDGDMRYSSLVVPSTLVL 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,039,468
Number of Sequences: 28952
Number of extensions: 124784
Number of successful extensions: 293
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)