Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G05
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   222   3e-59
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   199   3e-52
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    28   1.4  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   7.4  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   9.8  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.8  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  222 bits (543), Expect = 3e-59
 Identities = 100/156 (64%), Positives = 129/156 (82%)
 Frame = +1

Query: 196 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 375
           S++Y+V GG RAV+FDR +GV++ VV EGTHF IPW+Q+ I++D+R+RPRN+ T TGSKD
Sbjct: 24  SSIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKD 83

Query: 376 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 555
           LQ V++TLR+L RP    LP+IY  LG+DYDERVLPSI +E+LK+VVAQFDA ELITQRE
Sbjct: 84  LQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQRE 143

Query: 556 IVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
           +VS K+   L +RA +FG+ L D+SITH+TFGKEFT
Sbjct: 144 VVSAKIRQELVQRATEFGIRLEDVSITHMTFGKEFT 179


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  199 bits (486), Expect = 3e-52
 Identities = 89/156 (57%), Positives = 122/156 (78%)
 Frame = +1

Query: 196 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 375
           ++L+NVDGGHRA+ + R  G+K L+  EGTHF IPW++  I +D+R++PRN+ ++TG+KD
Sbjct: 34  TSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKD 93

Query: 376 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 555
           LQ VNI  R+L RP    LP+IY  LG DYDERVLPSI +EVLK+VVAQF+A +LITQRE
Sbjct: 94  LQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRE 153

Query: 556 IVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
            VS+ V ++L +RAA+F ++L D+S+TH+ F  EFT
Sbjct: 154 RVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFT 189


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = +1

Query: 283 THFFIPWVQRPIIFDIRSRPRNVP---TITGSKDLQNV----NITLRILFRPVPDQLPRI 441
           TH+ +P +  P+ +DIR  P       T+T   + + +     + L IL   VP  LP I
Sbjct: 519 THYVLPTLLAPLGYDIREHPGGQQFWNTLTAKSEAKTIRSFTKLKLFILLIAVPFALPMI 578

Query: 442 YTI 450
             I
Sbjct: 579 ILI 581


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 300 RNEEMCAFTNN*LLNTSKSIEDNSSVTTVDIIQCRIDNTSNQCH 169
           +NEE C      LL  S +  DNSS  ++ +  C+     +Q H
Sbjct: 229 KNEEKCTVL---LLKRSNTDVDNSSSLSLTLPLCKFTKNGHQVH 269


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = +1

Query: 439 IYTILGIDYDERVLPSITSEVLKAVVAQ----FD---AGELITQREIVSQKVNDSLTER 594
           IYT+  I   ER+   I  + L A+++Q    FD   AGE+ T+    +  + D L E+
Sbjct: 159 IYTVTFIIAGERIARRIRQDYLHAILSQNIGYFDRLGAGEITTRITTDTNFIQDGLGEK 217


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 354 RNISGSRPDVKYNWPLDPRNEEMCAFTNN*LLNTSKS 244
           +N+      +  N+ + P  E  C+F+N  L +TSKS
Sbjct: 293 KNLLQDASSISNNFEITP--ESWCSFSNQLLFSTSKS 327


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 471  FIIINTKNSVNSW*LIRNWSEEDTKCDVNILKIFTS-SNSRNIS 343
            +I ++ K S+NS    +++ +E + C  N+L  F S +NS  I+
Sbjct: 1131 YIKLSLKGSINSQITFKDFQQELSLCIENLLDSFLSKTNSYKIA 1174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,345
Number of Sequences: 5004
Number of extensions: 49350
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)