Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G05
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0626 - 35169352-35169546,35169736-35169948,35170102-351702... 202 3e-52
02_04_0362 - 22366668-22367516 202 3e-52
04_04_0143 - 23091613-23092467 199 1e-51
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925... 168 3e-42
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 157 1e-38
03_06_0427 - 33857008-33857137,33857224-33857258,33857966-338580... 85 4e-17
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 5.8
06_03_0385 - 20234160-20234798,20234888-20235238 28 7.7
>03_06_0626 -
35169352-35169546,35169736-35169948,35170102-35170272,
35170826-35170942,35171078-35171233
Length = 283
Score = 202 bits (492), Expect = 3e-52
Identities = 92/156 (58%), Positives = 123/156 (78%)
Frame = +1
Query: 196 SALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKD 375
++LYNV+GGHRA++F+R G+K V EGTHF IPW +RPII+D+R+RP V + +GS+D
Sbjct: 29 NSLYNVEGGHRAIVFNRLEGIKDKVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRD 88
Query: 376 LQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 555
LQ V I LR+L RP+P++LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE
Sbjct: 89 LQMVRIGLRVLTRPLPEKLPTIYRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQRE 148
Query: 556 IVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
VS+++ LTERA+ F + L D+SIT L+FGKEFT
Sbjct: 149 AVSREIRKILTERASNFNIALDDVSITSLSFGKEFT 184
>02_04_0362 - 22366668-22367516
Length = 282
Score = 202 bits (492), Expect = 3e-52
Identities = 96/179 (53%), Positives = 128/179 (71%)
Frame = +1
Query: 127 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 306
AA L ++ ++ALY VDGG RAVIFDRF GV EGTHF +PW+
Sbjct: 8 AASLLTKLAQAAAGLGIAASAASTALYTVDGGQRAVIFDRFRGVLPETSSEGTHFIVPWL 67
Query: 307 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPS 486
Q+P IFDIR+RP + + +G+KDLQ V++TLR+L RP D+LP I+T LG++YDE+VLPS
Sbjct: 68 QKPFIFDIRTRPHSFSSTSGTKDLQMVSLTLRVLARPDIDRLPDIFTSLGLEYDEKVLPS 127
Query: 487 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
I +EVLKAVVAQF+A +L+T+R VS V DSL RAA+F ++L D++ITHL +G EF+
Sbjct: 128 IGNEVLKAVVAQFNADQLLTERPHVSALVRDSLIRRAAEFNIVLDDVAITHLAYGPEFS 186
>04_04_0143 - 23091613-23092467
Length = 284
Score = 199 bits (486), Expect = 1e-51
Identities = 92/157 (58%), Positives = 123/157 (78%)
Frame = +1
Query: 193 NSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSK 372
+++LY VDGG RAVIFDRF GV VGEGTHF +PW+Q+P +FDIR+RP N + +G+K
Sbjct: 29 SASLYTVDGGERAVIFDRFRGVLPETVGEGTHFLVPWLQKPFVFDIRTRPHNFSSNSGTK 88
Query: 373 DLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQR 552
DLQ VN+TLR+L RP LP I+T LG++YD++VLPSI +EVLKAVVAQF+A +L+T+R
Sbjct: 89 DLQMVNLTLRLLSRPDVVHLPTIFTSLGLEYDDKVLPSIGNEVLKAVVAQFNADQLLTER 148
Query: 553 EIVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
VS V D+L RA +F +IL D++ITHL++G EF+
Sbjct: 149 PHVSALVRDALIRRAREFNIILDDVAITHLSYGIEFS 185
>07_01_1055 -
9253936-9254130,9254271-9254483,9254588-9254758,
9255743-9255859,9257021-9257186,9258885-9258934,
9259095-9259268
Length = 361
Score = 168 bits (409), Expect = 3e-42
Identities = 80/138 (57%), Positives = 104/138 (75%)
Frame = +1
Query: 250 AGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQ 429
+G V EGTHF IPW +RPII+D+R+RP V + +GS+DLQ V I LR+L RP+P++
Sbjct: 125 SGTIYQVYPEGTHFMIPWFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEK 184
Query: 430 LPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFG 609
LP IY LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA F
Sbjct: 185 LPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFN 244
Query: 610 LILXDISITHLTFGKEFT 663
+ L D+SIT L+FGKEFT
Sbjct: 245 IALDDVSITSLSFGKEFT 262
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +1
Query: 196 SALYNVDGGHRAVIFDRFAGVK 261
++LYNV+GGHRA++F+R G+K
Sbjct: 35 NSLYNVEGGHRAIVFNRIQGIK 56
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 157 bits (380), Expect = 1e-38
Identities = 77/134 (57%), Positives = 101/134 (75%)
Frame = +1
Query: 262 QLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRI 441
Q V EGT F I +RPII+D+R+RP V + +GS+DLQ V I LR+L RP+P++LP I
Sbjct: 216 QEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPLPEKLPTI 275
Query: 442 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILX 621
Y LG +++ERVLPSI E LKAVVAQ++A +LITQRE VS+++ LTERA+ F + L
Sbjct: 276 YRSLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASNFNIALD 335
Query: 622 DISITHLTFGKEFT 663
D+SIT L+FGKEFT
Sbjct: 336 DVSITSLSFGKEFT 349
>03_06_0427 -
33857008-33857137,33857224-33857258,33857966-33858046,
33858213-33858338,33858410-33858568,33858797-33858934,
33859084-33859155,33859359-33860273
Length = 551
Score = 85.4 bits (202), Expect = 4e-17
Identities = 48/110 (43%), Positives = 68/110 (61%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRI 405
R + ++ + QL+ E +HF IPW +R IFD+ RP V + +GS+DLQ V L +
Sbjct: 323 REICNNKAVRLLQLLNPEKSHFSIPWFERLTIFDVCPRPNLVESTSGSRDLQMVRPGLGV 382
Query: 406 LFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQRE 555
L RP+P + Y LG ++ ERVL S+ E LKAVVAQ++A +LI RE
Sbjct: 383 LTRPLPTK----YRSLGDNFCERVLTSLMHETLKAVVAQYNASQLIIPRE 428
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.3 bits (60), Expect = 5.8
Identities = 29/96 (30%), Positives = 45/96 (46%)
Frame = -3
Query: 513 NCFQNF*GNRWKYSFIIINTKNSVNSW*LIRNWSEEDTKCDVNILKIFTSSNSRNISGSR 334
N Q F N+ +Y FI+I+ +NSW IR+ + D C K+ T+S N++
Sbjct: 261 NELQEFLQNK-RY-FIVIDGLWDINSWNKIRS-ALPDDNCG---SKVVTTSGISNVARDV 314
Query: 333 PDVKYNWPLDPRNEEMCAFTNN*LLNTSKSIEDNSS 226
DV PL N + T ++ SK +E S+
Sbjct: 315 GDVYNLQPLSHGNSKKLLSTRL-YVDESKCLESTSA 349
>06_03_0385 - 20234160-20234798,20234888-20235238
Length = 329
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 304 VQRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPR 438
V PII D++ P + T G+ + +IT RI P P PR
Sbjct: 271 VANPIIIDMKYCPNKICTANGNSKVTIKDITSRI--SPAPPPRPR 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,499
Number of Sequences: 37544
Number of extensions: 293102
Number of successful extensions: 686
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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