Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G05
(665 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 255 2e-68
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 171 4e-43
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 38 0.006
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 38 0.006
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 33 0.18
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 33 0.18
Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical pr... 32 0.42
AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin prot... 31 0.73
U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 30 1.3
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 30 1.3
AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical... 29 3.0
Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical pr... 29 3.9
U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical pr... 28 6.8
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 28 6.8
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 6.8
AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 28 6.8
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 28 6.8
AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical ... 27 9.1
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 255 bits (624), Expect = 2e-68
Identities = 125/179 (69%), Positives = 142/179 (79%)
Frame = +1
Query: 127 AAQLFNRIXXXXXXXXXXXXXXNSALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWV 306
A +L R+ +ALYNVDGG RAVIFDRF+GVK VVGEGTHF IPWV
Sbjct: 5 AQKLLGRLGTVGVGLSIAGGIAQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWV 64
Query: 307 QRPIIFDIRSRPRNVPTITGSKDLQNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPS 486
Q+PIIFDIRS PR V TITGSKDLQNVNITLRIL RP PD+LP IY +G+DY ERVLPS
Sbjct: 65 QKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPS 124
Query: 487 ITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
IT+EVLKAVVAQFDA E+ITQRE+VSQ+ + +L ERAAQFGL+L DI+ITHL FG+EFT
Sbjct: 125 ITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLLLDDIAITHLNFGREFT 183
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 171 bits (416), Expect = 4e-43
Identities = 81/155 (52%), Positives = 111/155 (71%)
Frame = +1
Query: 199 ALYNVDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTITGSKDL 378
+++ V+ GHRA++F+R G+ + EG HF IPW Q PII+DIR+RP + + TGSKDL
Sbjct: 39 SMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDL 98
Query: 379 QNVNITLRILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI 558
Q VNI LR+L RP P+ L IY LG +++ERVLPSI +EVLK VVA+F+A +LITQR+
Sbjct: 99 QMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQ 158
Query: 559 VSQKVNDSLTERAAQFGLILXDISITHLTFGKEFT 663
VS V +L ERA F +IL D+S+T L F +++
Sbjct: 159 VSMLVRKTLIERALDFNIILDDVSLTELAFSPQYS 193
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 402
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 403 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 582
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 583 LTERAAQFGL 612
L E +G+
Sbjct: 187 LDEATEPWGI 196
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPT-ITGSKDLQNVNITLR 402
RAV+F R + V G G F IP + + D+R NVP+ S+D V++
Sbjct: 72 RAVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVPSQEILSRDSVTVSVDAV 130
Query: 403 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDS 582
+ F+ V D I +++G+ + L+ ++ E+++ RE +S + S
Sbjct: 131 VYFK-VFDP---ITSVVGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKIS 186
Query: 583 LTERAAQFGL 612
L E +G+
Sbjct: 187 LDEATEPWGI 196
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 33.1 bits (72), Expect = 0.18
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 402
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 403 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI---VSQKV 573
I FR V + + + + + R+L T L+ V+ E++++R+ +S+KV
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 574 NDSLTE 591
D T+
Sbjct: 258 LDEGTD 263
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 33.1 bits (72), Expect = 0.18
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 4/126 (3%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 402
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 142 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 201
Query: 403 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREI---VSQKV 573
I FR V + + + + + R+L T L+ V+ E++++R+ +S+KV
Sbjct: 202 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIASISEKV 257
Query: 574 NDSLTE 591
D T+
Sbjct: 258 LDEGTD 263
>Z81072-4|CAB03018.2| 327|Caenorhabditis elegans Hypothetical
protein F30A10.5 protein.
Length = 327
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/117 (17%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Frame = +1
Query: 268 VVGEGTHFFIPWVQR-PIIFDIRSRPRNVPTITGSKDLQNVNITLR-ILFRPVPDQLPRI 441
++ G +F +P + + + ++R +P G+ + NV + L +L+ V D
Sbjct: 58 ILEPGLNFLLPIIDKIKFVQNLREIAIEIPE-QGAITIDNVQLRLDGVLYLRVFDPYKAC 116
Query: 442 YTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVSQKVNDSLTERAAQFGL 612
G+D E + + +++ V + + + +RE++++ + ++ + +A +G+
Sbjct: 117 DASYGVDDPEFAVTQLAQTTMRSEVGKINLDTVFKERELLNENIVFAINKASAPWGI 173
>AC006638-5|AAP82655.1| 175|Caenorhabditis elegans Stomatin protein
5, isoform c protein.
Length = 175
Score = 31.1 bits (67), Expect = 0.73
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Frame = +1
Query: 226 RAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNV-PTITGSKDLQNVNITLR 402
RAVIF +K G G F +P + I D+R +V P S+D V++
Sbjct: 58 RAVIFRLGRLIKGGTKGPGLFFVLPCIDTMKIVDLRVLSFDVPPQEILSRDSVTVSVEAV 117
Query: 403 ILFRPVPDQLPRIYTILGIDYDERVLPSITSEVLKAVVAQFDAGELITQREIVS 564
I FR V + + + + + R+L T L+ V+ E++++R+ ++
Sbjct: 118 IYFR-VSNPVISVTNVNDAQFSTRLLAQTT---LRNVLGTKTLSEMLSERDAIA 167
>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform a protein.
Length = 1001
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 400 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 567
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 568 KVNDSLTERAAQFGLILXDISITHLTFGKE 657
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
chloride channel CLH-3b protein.
Length = 1001
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +1
Query: 400 RILFRPVPDQLPRIY---TILGIDYDERVLPSITSEVLKAVVAQFDAGELIT-QREIVSQ 567
R L PV P++ T+ G+ +E +T E +A+ FDA L T +RE+ +
Sbjct: 668 RFLIVPVAKNGPQVAKNETLTGLS-EENARKILTVEEKQAL---FDAASLATPKREMSGK 723
Query: 568 KVNDSLTERAAQFGLILXDISITHLTFGKE 657
+N E G I SITHL+FG++
Sbjct: 724 TINPVHIESHHTIGDIFR--SITHLSFGRQ 751
>AF039052-11|AAF98632.1| 583|Caenorhabditis elegans Hypothetical
protein T22D1.11 protein.
Length = 583
Score = 29.1 bits (62), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 298 PWVQRPIIFDIRSRPRNVPTITG 366
P +Q ++ D +P+N+PT+TG
Sbjct: 315 PLIQNVLVQDFYEKPKNIPTLTG 337
>Z67879-2|CAA91788.2| 156|Caenorhabditis elegans Hypothetical
protein C05E7.3 protein.
Length = 156
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 211 VDGGHRAVIFDRFAGVKQLVVGEGTHFFIPWVQRPIIFDIRSRPRNVPTI 360
+ GG FDRF K+ + GE I W +R +R+ R++P I
Sbjct: 31 IGGGDDMAHFDRFITHKRAINGELRRSSILWGKRAHASGLRNFERDIPLI 80
>U53344-3|AAA96224.1| 702|Caenorhabditis elegans Hypothetical
protein T07H6.4 protein.
Length = 702
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 314 GLWTQGMKKCVPSPTTSCLTPANR-SKIT 231
G+W+ + C+P T C P++R SK+T
Sbjct: 366 GVWSSPIPYCIPIQATDCPFPSSRPSKLT 394
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -1
Query: 359 IVGTFLGRDLMSNIIGLWTQGMKKCVPSPTTSCLTPANRSKITAL*PPSTLYNAE 195
+ G + RDL+ IG+W G V TT+ T +N + PSTLY+ E
Sbjct: 970 VPGLKVARDLVDQNIGVWLGGQ---VNITTTTATTTSNSTSY-----PSTLYSLE 1016
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 505 KAVVAQFDAGELITQREIVS-QKVNDSLTERAAQFGLILXDIS 630
K +V +F A E + ++++ S +K++ LTE GL+L D +
Sbjct: 465 KHLVERFSANEELIEQKLTSIEKLHQLLTELGGDSGLLLSDFN 507
>AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical
protein M04G7.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 255 TSKSIEDNSSVTTVDIIQCRIDNTSNQCH 169
TSKS+E+NSS TT D I D + + +
Sbjct: 219 TSKSLEENSSETTNDSISLADDEETREAY 247
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = +1
Query: 346 NVPTITGSKDLQNVNI-TLRILFRPVPDQLPRIYTI----LGIDYDERVLPSITSEVLK- 507
+VP+I S +N T++ L LPR T+ +G+D+ R+L TS++L
Sbjct: 621 SVPSIVNSITTAKINEETVQDLIHNDNAILPRTTTLPDILIGLDFMSRILGETTSKILPN 680
Query: 508 -AVVAQFDAGELITQREIVSQK 570
+ D G ++T E S K
Sbjct: 681 GTTINYTDVGIIVTGTENQSTK 702
>AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical
protein T08B6.4 protein.
Length = 631
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 374 SLLPVIVGTFLGRDLMSNIIGLWTQGMKK---CVPSPTTSCLT 255
+L+ + VG L L + G+W +GM K C PS TT +T
Sbjct: 537 TLITLAVGGGLFYVLRRTVFGIWYRGMYKRYGCDPSGTTGGIT 579
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,801
Number of Sequences: 27780
Number of extensions: 281574
Number of successful extensions: 704
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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