Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G01
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   3.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   3.9  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   5.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   5.1  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.0  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 264 EIRINISQPFSVLNFVMPYF 205
           E R+ +S P +VLN  MP +
Sbjct: 132 ESRVMMSPPGNVLNLTMPKY 151


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 264 EIRINISQPFSVLNFVMPYF 205
           E R+ +S P +VLN  MP +
Sbjct: 132 ESRVMMSPPGNVLNLTMPKY 151



 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 397 YICQHYPRIPTAP 359
           ++C +YP +P  P
Sbjct: 169 FLCNNYPPLPQVP 181


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 330 IQRPFCRWTHQIFLIRIVCL 271
           ++R +  W+  + + RIVCL
Sbjct: 315 LERLYFYWSFALLITRIVCL 334


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 578 FSTLAKAASLILGSG*GPMLATVQTLL 498
           +STLA A +   G    P +++ +TLL
Sbjct: 268 YSTLASAVASANGPSQDPSISSTETLL 294


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +1

Query: 577 KTSPHPEPLQTEVNL--VNQP 633
           K+SP   P+Q++V+L  V++P
Sbjct: 226 KSSPRSSPVQSDVSLSPVHEP 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,718
Number of Sequences: 336
Number of extensions: 2711
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)