Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G01
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.59 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.0  
SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    27   3.2  
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc...    27   3.2  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   4.2  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   5.5  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           26   5.5  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.5  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   7.3  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   7.3  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.7  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   9.7  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = -1

Query: 458 SNGLEDTTLGAFFFSSTLAFLYLSTLSAYSNRTAYDNSQLSCSFSVPSAAGLTKS 294
           S+ +  ++  +  FSSTL+   +S+ S++S+     +S +S S S PS++  + +
Sbjct: 304 SSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST 358


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 220 KIEDREGLRNIDSDFWKEAYNTYQKDLVSPAAEGTLNE 333
           K+E +  L+N+D + +K+ YN      VSP   G LN+
Sbjct: 19  KVEMKPFLKNLDKNLFKKTYNLVAAK-VSPKKVGLLNK 55


>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 445 KTRHWELSFSLQLWHFYICQHYPRIPTAPHTTIAN*VVH 329
           + R+W LS ++Q +H ++      + TAP+T + + + H
Sbjct: 200 RARNWLLSAAIQPYHSWVYWRDVDVETAPNTILEDLMRH 238


>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
           Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 100 LFKLKLSALGHPNPEFFNCEDE--KEYRSVV-LWLE 198
           L K +LS L H NPE F  ++E  K+Y     LW +
Sbjct: 138 LLKTQLSNLNHCNPETFELKNENTKKYMEAANLWTD 173


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 448 NPLDNLDFSSQAFKAGVNRVCTVASIGPHPDPKIRLA 558
           N   +LDF  +AF A +    TV +  P  DPK  L+
Sbjct: 355 NEEGSLDFLHRAFSATIKEYHTVWTATPRLDPKTGLS 391


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 538 DPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSD 639
           +PK+ LA +A +  T P  EPL  E     +P D
Sbjct: 348 NPKLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFD 381


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +1

Query: 178 SVVLWLEDQKIRHYKIEDREGLRNIDSDFWKEAY-----NTYQKDLVSPAAEGTLNEQLN 342
           S++ W  D+++R+Y   D + L ++  DF   ++     +T Q  ++       +N   N
Sbjct: 353 SIIYWDADKELRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGN 412

Query: 343 W-LLSYAVRL 369
           W +L+ A+ L
Sbjct: 413 WSILTRAIAL 422


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 457 DNLDFSSQAFKAGVNRVCTVASIGPHP 537
           DN++ S +A     N  C  +++G HP
Sbjct: 60  DNVENSEEALNLATNYECFTSTVGVHP 86


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 19  VELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSA 123
           V  HLD FVK  P  Y + +S    SNL ++ +S+
Sbjct: 242 VSKHLDGFVKILP--YDRVFSDAKNSNLTRIGISS 274


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 512 VQTLLTPALNA*LEKSRLSNGLEDTTLGAF 423
           +Q   T   NA  EKSR+ N LED T   F
Sbjct: 90  LQLTETKCRNAESEKSRVENELEDLTSSLF 119


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 136 NPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGL 243
           NPEFFN +   +  S+     D  I  Y++E  E L
Sbjct: 40  NPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYL 75


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 31  LDNFVKFTPTC-YLKTYSFLTMSNLFKLKLSALGHPNPEFFNCED 162
           +DN V  TPT  Y++ Y+ L   N  K +LSA   P+ +    ED
Sbjct: 52  VDNLVN-TPTYFYIQRYTALLFQNNLKKQLSA-AFPSSDTMQLED 94


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 22 ELHLDNFVKFTPTCYL 69
          E+  D+ VK+ PTCYL
Sbjct: 41 EIKKDDTVKYDPTCYL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,855
Number of Sequences: 5004
Number of extensions: 44102
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)