Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G01
         (659 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_49016| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_45335| Best HMM Match : Runt (HMM E-Value=0)                        28   7.7  

>SB_16320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/56 (53%), Positives = 44/56 (78%)
 Frame = +1

Query: 100 LFKLKLSALGHPNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFW 267
           +F+ KL+AL + +P+ FN ++E E R++V+WLEDQKIR Y+IEDRE LR+I +  W
Sbjct: 1   MFRRKLAALEYHHPDNFNIQNEDECRNLVVWLEDQKIRLYRIEDRESLRDIGNATW 56


>SB_49016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +1

Query: 286 YQKDLVSPAAEGTLNEQLNWLLSYAVRLEYADNVDXXXXXXXXXXXXXXXXVS-SNPLDN 462
           Y  DL  P      +  L+WLL++A+RLEYADN +                   +  L N
Sbjct: 1   YLDDLQCPLKSREKSTVLDWLLAHAIRLEYADNAEKYNSQSQRTASDTSKTTELTEALLN 60

Query: 463 LDFSSQAFKAGVNRVCTVASIGPHPDPKIRL 555
           L       KAGV  V  + ++  H DP + L
Sbjct: 61  LTADDADLKAGVLSVARLLNLPEHHDPYVLL 91


>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 312  RWTHQIFLIRIVCLLPEIRINISQPFSVLNFVMPYFL 202
            RWT++ F  R + LLP  +IN  +P   +  ++  F+
Sbjct: 981  RWTYREFFARYIMLLPSKKINRKKPRETIKLILETFI 1017


>SB_45335| Best HMM Match : Runt (HMM E-Value=0)
          Length = 496

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 517 ASIGPHPDPKIRLAALAKVLKTSPHPEPLQTEVNLVNQPSDV 642
           +S+ PHP P + ++  A  L+ +    P    VNL N  S++
Sbjct: 238 SSLSPHPQPDVSVSFAALPLQPTALQPPKPQTVNLQNTTSNM 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,586,442
Number of Sequences: 59808
Number of extensions: 327108
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)