Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_G01
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical pr... 39 0.003
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 30 1.3
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 30 1.3
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 30 1.3
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 30 1.3
AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 29 2.2
AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical ... 29 2.2
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 3.9
U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical pr... 28 6.8
U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical pr... 27 8.9
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 27 8.9
>Z47075-2|CAA87380.1| 253|Caenorhabditis elegans Hypothetical
protein E02H1.5 protein.
Length = 253
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 442 SSNPLDNLDFSSQAFKAGVNRVCTVASIGP-HPDPKIRLAA 561
S NPL+ LD+SS F +C++ I HPDPK+ + A
Sbjct: 119 SQNPLNRLDYSSPNFAENARALCSILGISAHHPDPKVLMKA 159
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 LCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRSV 183
+CY LH V F Y+ +Y + + +L+ L EF E+E +++
Sbjct: 1521 MCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQTI 1578
Query: 184 VLWLED--QKIRHYKIEDREGL 243
WLE +K+R+ +D EG+
Sbjct: 1579 RTWLEGCLRKMRNPSQKDAEGV 1600
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 LCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRSV 183
+CY LH V F Y+ +Y + + +L+ L EF E+E +++
Sbjct: 1555 MCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQTI 1612
Query: 184 VLWLED--QKIRHYKIEDREGL 243
WLE +K+R+ +D EG+
Sbjct: 1613 RTWLEGCLRKMRNPSQKDAEGV 1634
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 LCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRSV 183
+CY LH V F Y+ +Y + + +L+ L EF E+E +++
Sbjct: 1666 MCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQTI 1723
Query: 184 VLWLED--QKIRHYKIEDREGL 243
WLE +K+R+ +D EG+
Sbjct: 1724 RTWLEGCLRKMRNPSQKDAEGV 1745
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 4 LCYRHVELHLDNFVKFTPTCYLKTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEYRSV 183
+CY LH V F Y+ +Y + + +L+ L EF E+E +++
Sbjct: 1585 MCYEMERLHNGEEVSFHDVLYMLSYRSVDIRKSLQLE-ELLQREELEFI-IEEEVAKQTI 1642
Query: 184 VLWLED--QKIRHYKIEDREGL 243
WLE +K+R+ +D EG+
Sbjct: 1643 RTWLEGCLRKMRNPSQKDAEGV 1664
>AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical
protein T07D3.9a protein.
Length = 441
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 16 HVELHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 135
HV LH D+FV +T Y++ T+S+ KL +L+ L HP
Sbjct: 347 HV-LHFDSFVTYTDGKYVQVKVAATISDQHKLPELAKLNHP 386
>AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical
protein T07D3.9b protein.
Length = 422
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 16 HVELHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 135
HV LH D+FV +T Y++ T+S+ KL +L+ L HP
Sbjct: 302 HV-LHFDSFVTYTDGKYVQVKVAATISDQHKLPELAKLNHP 341
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 25 LHLDNFVKFTPTCYLKTYSFLTMSNLFKL-KLSALGHP 135
LHLD+FV +T YL+ ++S+ KL +L+ L HP
Sbjct: 369 LHLDSFVTYTDGKYLQMKVAASISDQNKLPELAKLNHP 406
>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
protein C09H6.1b protein.
Length = 1309
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 NFVKFTPTCYL-KTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQKI 210
N K PT + T + N + K+ L C +E +S+ LW + +K+
Sbjct: 630 NHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQREKL 689
Query: 211 RHYKIEDREGLRNID 255
RH +++++ + ID
Sbjct: 690 RHPELDEQFTRKMID 704
>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
protein C09H6.1a protein.
Length = 1311
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 NFVKFTPTCYL-KTYSFLTMSNLFKLKLSALGHPNPEFFNCEDEKEY-RSVVLWLEDQKI 210
N K PT + T + N + K+ L C +E +S+ LW + +K+
Sbjct: 630 NHEKLHPTVVVANTNEAPVVKNEIEAKVEVLSKTVSSPVECTEESSLSKSIQLWCQREKL 689
Query: 211 RHYKIEDREGLRNID 255
RH +++++ + ID
Sbjct: 690 RHPELDEQFTRKMID 704
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 532 HPDPKIRLAALAKVLKTSPHPEPL 603
HPDP I + A+A V+ +P P P+
Sbjct: 786 HPDPVISMNAMASVIPGAPLPAPV 809
>U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical
protein C06A6.5 protein.
Length = 413
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 64 YLKTYSFLTMSNLFKLKLS-ALGH-PNPEFFNCEDEKEYRSVVLWLEDQKIRHYKIEDRE 237
Y T S ++N K +LS A+ + + N E +K R+VV WL+ ++
Sbjct: 118 YRSTRSVEALTNFVKFQLSTAINEFSSQDQLNQEMDKSKRNVVAWLKKDGPEFANLKKVA 177
Query: 238 GLRNIDSDFW 267
+ D FW
Sbjct: 178 SILREDCSFW 187
>U51993-1|AAB36851.2| 377|Caenorhabditis elegans Hypothetical
protein F56F10.2 protein.
Length = 377
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -2
Query: 223 FCNALFFDLLTTALHFCTP 167
F N LF +LLTT LH+C P
Sbjct: 57 FVNKLF-ELLTTILHYCMP 74
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 276 CLLPEIRINISQPFSVLNFVMPYFLIF*PQHYTSVLLLIFAVKELW 139
C EIR+ ++ F + N +I +SV L +FA+++LW
Sbjct: 7 CTSEEIRLTLTSSFMMGNHCFILLIII-----SSVFLTVFAIRKLW 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,320,708
Number of Sequences: 27780
Number of extensions: 254051
Number of successful extensions: 701
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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