Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_G01
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    29   0.030
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   6.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 142 EFFNCEDEKEYRSVVLWLEDQKIRHYKIEDREGLRNIDSDFWK 270
           + F CE+ KE  +V L  E+QK R   ++D + LRN   D +K
Sbjct: 104 DLFECEN-KEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYK 145


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 264 EIRINISQPFSVLNFVMPYFLIF*PQHYTSVLLLIFAV 151
           EIR+     F V N ++P  LI       SV LL+F V
Sbjct: 206 EIRLRRRPMFYVFNLILPCILI------NSVALLVFYV 237


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 34  DNFVKFTPTCYLKTYSFLTMSNLFK 108
           D  V+    C LK ++ L  +N+FK
Sbjct: 56  DKKVQLYCECILKNFNILDKNNVFK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,794
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)